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  5. AT3G05500

AT3G05500


Description : Rubber elongation factor protein (REF)


Gene families : OG0001058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G05500
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Adi_g054159 No alias lipid droplet-associated factor *(LDAP) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0207.g057875 No alias lipid droplet-associated factor *(LDAP) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01027980001 No alias Lipid metabolism.lipid bodies-associated activities.LDAP protein 0.03 OrthoFinder output from all 47 species
Len_g50862 No alias lipid droplet-associated factor *(LDAP) & original... 0.04 OrthoFinder output from all 47 species
MA_23368g0010 No alias associated factor (LDAP) 0.02 OrthoFinder output from all 47 species
Pir_g32026 No alias lipid droplet-associated factor *(LDAP) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e027499_P002 Zm00001e027499 associated factor (LDAP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005811 lipid droplet IDA Interproscan
BP GO:0006865 amino acid transport RCA Interproscan
BP GO:0010200 response to chitin RCA Interproscan
BP GO:0019915 lipid storage IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEP HCCA
MF GO:0004708 MAP kinase kinase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0005344 oxygen carrier activity IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0015669 gas transport IEP HCCA
BP GO:0015671 oxygen transport IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0036293 response to decreased oxygen levels IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0070482 response to oxygen levels IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008802 REF 17 231
No external refs found!