AT3G02560

Description : Ribosomal protein S7e family protein

Gene families : OG0001505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001505_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G02560

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00257730	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	OrthoFinder output from all 47 species
AMTR_s00056p00135710	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Adi_g030311	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Adi_g051929	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Adi_g084205	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Adi_g124364	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aev_g10789	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aev_g26692	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g21941	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Ala_g34320	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Ala_g36863	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Als_g24302	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g27864	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Als_g36971	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aob_g00804	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Aob_g38285	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g50244	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Aop_g68949	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Azfi_s0028.g023989	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Azfi_s0164.g054279	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Cba_g08926	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g45359	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g58662	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.32G072400.1	Ceric.32G072400	component *(eS7) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Ceric.35G018000.1	Ceric.35G018000	component *(eS7) of small ribosomal-subunit (SSU)...	0.29	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021682.9	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.43	OrthoFinder output from all 47 species
Cre12.g498900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.42	OrthoFinder output from all 47 species
Dac_g31681	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Dcu_g18305	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Dcu_g29104	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Dcu_g35832	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dde_g13648	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g06429	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ehy_g07360	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01008307001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.36	OrthoFinder output from all 47 species
GSVIVT01031018001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.33	OrthoFinder output from all 47 species
Gb_33823	No alias	component RPS7 of SSU proteome	0.19	OrthoFinder output from all 47 species
LOC_Os03g18570.1	LOC_Os03g18570	component RPS7 of SSU proteome	0.42	OrthoFinder output from all 47 species
LOC_Os03g18580.1	LOC_Os03g18580	component RPS7 of SSU proteome	0.43	OrthoFinder output from all 47 species
LOC_Os05g27940.1	LOC_Os05g27940	component RPS7 of SSU proteome	0.14	OrthoFinder output from all 47 species
Len_g10576	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Len_g31152	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g00395	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Lfl_g31925	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g37499	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_52277g0010	No alias	component RPS7 of SSU proteome	0.12	OrthoFinder output from all 47 species
Mp6g08120.1	No alias	component RPS7 of SSU proteome	0.39	OrthoFinder output from all 47 species
Msp_g09134	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Msp_g34879	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Nbi_g01754	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Ore_g04569	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Pir_g57015	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Pp3c20_1360V3.1	Pp3c20_1360	Ribosomal protein S7e family protein	0.28	OrthoFinder output from all 47 species
Pp3c24_18220V3.1	Pp3c24_18220	Ribosomal protein S7e family protein	0.26	OrthoFinder output from all 47 species
Pp3c8_22480V3.1	Pp3c8_22480	Ribosomal protein S7e family protein	0.27	OrthoFinder output from all 47 species
Ppi_g18679	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g46098	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017312	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g01537	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Sam_g13288	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Sam_g48291	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g52973	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Smo148446	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	OrthoFinder output from all 47 species
Solyc03g119360.3.1	Solyc03g119360	component RPS7 of SSU proteome	0.41	OrthoFinder output from all 47 species
Solyc06g069090.3.1	Solyc06g069090	component RPS7 of SSU proteome	0.43	OrthoFinder output from all 47 species
Spa_g16479	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Spa_g22409	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Spa_g43257	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Tin_g02457	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Tin_g42536	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e001349_P002	Zm00001e001349	component RPS7 of SSU proteome	0.45	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IBA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0030684	preribosome	None	Extended
CC	GO:0030686	90S preribosome	IBA	Interproscan
CC	GO:0032040	small-subunit processome	IBA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042274	ribosomal small subunit biogenesis	IBA	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048569	post-embryonic animal organ development	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000554	Ribosomal_S7e	7	187

External Links

No external refs found!

AT3G02560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation