AT3G01180 (SS2, AtSS2)

Aliases : SS2, AtSS2

Description : starch synthase 2

Gene families : OG0001429 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001429_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G01180
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
Ala_g06429	SS2, AtSS2	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g20539	SSI1, ATSS1, SSI	EC_2.4 glycosyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene30910.t1	SSI1, ATSS1,...	EC_2.4 glycosyltransferase & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g29973	SSI1, ATSS1, SSI	EC_2.4 glycosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Cre04.g215150	SSI1, ATSS1, SSI	Enzyme classification.EC_2 transferases.EC_2.4...	0.02	OrthoFinder output from all 47 species
Dac_g23804	SS2, AtSS2	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04935	SS2, AtSS2	EC_2.4 glycosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011429001	SS2, AtSS2	Carbohydrate metabolism.starch...	0.03	OrthoFinder output from all 47 species
Len_g11881	SSI1, ATSS1, SSI	EC_2.4 glycosyltransferase & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g01990	SSI1, ATSS1, SSI	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g26481	SS2, AtSS2	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g31466	SSI1, ATSS1, SSI	EC_2.4 glycosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g11312	SS2, AtSS2	EC_2.4 glycosyltransferase & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g13598	SS2, AtSS2	EC_2.4 glycosyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e030868_P001	SS2, AtSS2,...	starch synthase (SSII)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001666	response to hypoxia	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006643	membrane lipid metabolic process	None	Extended
BP	GO:0006664	glycolipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
MF	GO:0009011	starch synthase activity	IMP	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009247	glycolipid biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010021	amylopectin biosynthetic process	IMP	Interproscan
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	RCA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	ISS	Interproscan
MF	GO:0016758	hexosyltransferase activity	None	Extended
BP	GO:0019374	galactolipid metabolic process	None	Extended
BP	GO:0019375	galactolipid biosynthetic process	RCA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019751	polyol metabolic process	None	Extended
BP	GO:0032958	inositol phosphate biosynthetic process	None	Extended
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043647	inositol phosphate metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046173	polyol biosynthetic process	None	Extended
BP	GO:0046467	membrane lipid biosynthetic process	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended
BP	GO:1903509	liposaccharide metabolic process	None	Extended
BP	GO:2000896	amylopectin metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0004866	endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005217	intracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005262	calcium channel activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0006874	cellular calcium ion homeostasis	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
MF	GO:0008066	glutamate receptor activity	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0019252	starch biosynthetic process	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030414	peptidase inhibitor activity	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0043200	response to amino acid	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055074	calcium ion homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
MF	GO:0061134	peptidase regulator activity	IEP	HCCA
MF	GO:0061135	endopeptidase regulator activity	IEP	HCCA
BP	GO:0071229	cellular response to acid chemical	IEP	HCCA
BP	GO:0071230	cellular response to amino acid stimulus	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071417	cellular response to organonitrogen compound	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1901699	cellular response to nitrogen compound	IEP	HCCA
BP	GO:1901701	cellular response to oxygen-containing compound	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013534	Starch_synth_cat_dom	302	544
IPR001296	Glyco_trans_1	604	745

External Links

No external refs found!

AT3G01180 (SS2, AtSS2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation