AT2G47890

Description : B-box type zinc finger protein with CCT domain

Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G47890

Target	Alias	Description	ECC score	Gene Family Method
AT1G75540	STH2	salt tolerance homolog2	0.05	OrthoFinder output from all 47 species
Adi_g015146	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g33521	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14676	STO	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g44174	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g08244	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g11974	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g01696	STO	BBX class-IV transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g06936	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene08384.t1	LZF1, STH3,...	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene45209.t1	LZF1, STH3,...	BBX class-IV transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene59299.t1	STO, Aspi01Gene59299	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01138	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g25857	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g09412	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g02213	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26676	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01014097001	LZF1, STH3, DBB3	RNA biosynthesis.transcriptional activation.C2C2...	0.02	OrthoFinder output from all 47 species
LOC_Os02g43170.1	LOC_Os02g43170	transcription factor (BBX-DBB)	0.02	OrthoFinder output from all 47 species
LOC_Os04g45690.1	LOC_Os04g45690	transcription factor (BBX-DBB)	0.05	OrthoFinder output from all 47 species
LOC_Os05g11510.1	LZF1, STH3,...	transcription factor (BBX-DBB)	0.04	OrthoFinder output from all 47 species
LOC_Os09g35880.1	LOC_Os09g35880	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
LOC_Os12g10660.1	LZF1, STH3,...	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
Len_g31145	STH	BBX class-IV transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Msp_g21663	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g35258	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g02898	No alias	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10750	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Nbi_g36960	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g40701	STH	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g20142	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g37373	STO	BBX class-IV transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g19854	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g65956	No alias	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g18396	STH	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g39847	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g110180.4.1	Solyc01g110180	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
Solyc02g084420.3.1	Solyc02g084420	transcription factor (BBX-DBB)	0.02	OrthoFinder output from all 47 species
Spa_g54082	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g56814	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g09555	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e022915_P001	STO, Zm00001e022915	transcription factor (BBX-DBB)	0.04	OrthoFinder output from all 47 species
Zm00001e030183_P001	Zm00001e030183	transcription factor (BBX-DBB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009611	response to wounding	RCA	Interproscan
BP	GO:0009698	phenylpropanoid metabolic process	None	Extended
BP	GO:0009699	phenylpropanoid biosynthetic process	None	Extended
BP	GO:0009804	coumarin metabolic process	None	Extended
BP	GO:0009805	coumarin biosynthetic process	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044550	secondary metabolite biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0004602	glutathione peroxidase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010150	leaf senescence	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0019825	oxygen binding	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0090693	plant organ senescence	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	54	93
IPR010402	CCT_domain	287	329

External Links

No external refs found!

AT2G47890

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation