Description : RNA helicase family protein
Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT2G47250 | |
Cluster | HCCA: Cluster_68 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Adi_g008220 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g11041 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g23007 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g29988 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000984.27 | ESP3, EMB2733 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g22478 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g42294 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
Gb_22388 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os01g11370.1 | LOC_Os01g11370 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os06g09280.1 | LOC_Os06g09280 | RNA helicase (Prp22) | 0.03 | OrthoFinder output from all 47 species | |
Len_g09738 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Mp4g02780.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
Mp4g16380.1 | ESP3, EMB2733 | RNA helicase (Prp2) | 0.02 | OrthoFinder output from all 47 species | |
Mp7g03460.1 | EMB3011 | RNA helicase (Prp16) | 0.02 | OrthoFinder output from all 47 species | |
Ore_g17219 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g42980 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g09947 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g14599 | No alias | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g16290 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g16823 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g51772 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Solyc09g008120.4.1 | Solyc09g008120 | RNA helicase (Prp22) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e001487_P003 | Zm00001e001487 | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e016478_P002 | Zm00001e016478 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003724 | RNA helicase activity | ISS | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
CC | GO:0009941 | chloroplast envelope | IDA | Interproscan |
CC | GO:0016020 | membrane | IDA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0003697 | single-stranded DNA binding | IEP | HCCA |
MF | GO:0003725 | double-stranded RNA binding | IEP | HCCA |
CC | GO:0005635 | nuclear envelope | IEP | HCCA |
BP | GO:0006094 | gluconeogenesis | IEP | HCCA |
BP | GO:0006360 | transcription by RNA polymerase I | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006405 | RNA export from nucleus | IEP | HCCA |
BP | GO:0006406 | mRNA export from nucleus | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006497 | protein lipidation | IEP | HCCA |
BP | GO:0006498 | N-terminal protein lipidation | IEP | HCCA |
BP | GO:0006499 | N-terminal protein myristoylation | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
BP | GO:0009756 | carbohydrate mediated signaling | IEP | HCCA |
BP | GO:0009845 | seed germination | IEP | HCCA |
BP | GO:0009909 | regulation of flower development | IEP | HCCA |
BP | GO:0009933 | meristem structural organization | IEP | HCCA |
BP | GO:0010038 | response to metal ion | IEP | HCCA |
BP | GO:0010048 | vernalization response | IEP | HCCA |
BP | GO:0010074 | maintenance of meristem identity | IEP | HCCA |
BP | GO:0010162 | seed dormancy process | IEP | HCCA |
BP | GO:0010182 | sugar mediated signaling pathway | IEP | HCCA |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
BP | GO:0018377 | protein myristoylation | IEP | HCCA |
BP | GO:0019319 | hexose biosynthetic process | IEP | HCCA |
BP | GO:0019827 | stem cell population maintenance | IEP | HCCA |
BP | GO:0019915 | lipid storage | IEP | HCCA |
BP | GO:0022611 | dormancy process | IEP | HCCA |
BP | GO:0031365 | N-terminal protein amino acid modification | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0046686 | response to cadmium ion | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048532 | anatomical structure arrangement | IEP | HCCA |
BP | GO:0048580 | regulation of post-embryonic development | IEP | HCCA |
BP | GO:0048831 | regulation of shoot system development | IEP | HCCA |
BP | GO:0050657 | nucleic acid transport | IEP | HCCA |
BP | GO:0050658 | RNA transport | IEP | HCCA |
BP | GO:0050793 | regulation of developmental process | IEP | HCCA |
BP | GO:0050826 | response to freezing | IEP | HCCA |
BP | GO:0051028 | mRNA transport | IEP | HCCA |
BP | GO:0051168 | nuclear export | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0051235 | maintenance of location | IEP | HCCA |
BP | GO:0051236 | establishment of RNA localization | IEP | HCCA |
BP | GO:0051239 | regulation of multicellular organismal process | IEP | HCCA |
BP | GO:0051604 | protein maturation | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0098727 | maintenance of cell number | IEP | HCCA |
BP | GO:2000026 | regulation of multicellular organismal development | IEP | HCCA |
BP | GO:2000241 | regulation of reproductive process | IEP | HCCA |
No external refs found! |