AT2G46450 (ATCNGC12, CNGC12)

Aliases : ATCNGC12, CNGC12

Description : cyclic nucleotide-gated channel 12

Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G46450

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00177p00063110	DND1, ATCNGC2,...	Solute transport.channels.VIC superfamily.cyclic...	0.04	OrthoFinder output from all 47 species
AT2G24610	ATCNGC14, CNGC14	cyclic nucleotide-gated channel 14	0.08	OrthoFinder output from all 47 species
AT3G17700	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-binding transporter 1	0.06	OrthoFinder output from all 47 species
AT4G01010	ATCNGC13, CNGC13	cyclic nucleotide-gated channel 13	0.04	OrthoFinder output from all 47 species
AT5G15410	DND1, ATCNGC2, CNGC2	Cyclic nucleotide-regulated ion channel family protein	0.04	OrthoFinder output from all 47 species
Ala_g24844	ATCNGC20, CNGC20, CNBT1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene71929.t1	DND1, ATCNGC2,...	temperature sensor protein *(CNGC2) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g13170	DND1, ATCNGC2, CNGC2	temperature sensor protein *(CNGC2) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g07103	ATCNGC20, CNGC20, CNBT1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Dac_g37580	DND1, ATCNGC2, CNGC2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g26407	DND1, ATCNGC2, CNGC2	temperature sensor protein *(CNGC2) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02798	ATCNGC9, CNGC9	cyclic nucleotide-gated cation channel *(CNGC) &...	0.02	OrthoFinder output from all 47 species
GSVIVT01007786001	ATCNGC16, CNGC16	Solute transport.channels.VIC superfamily.cyclic...	0.04	OrthoFinder output from all 47 species
GSVIVT01029404001	ATCNGC20, CNGC20, CNBT1	Solute transport.channels.VIC superfamily.cyclic...	0.03	OrthoFinder output from all 47 species
MA_167620g0010	DND1, ATCNGC2, CNGC2	cyclic nucleotide-gated cation channel (CNGC)....	0.03	OrthoFinder output from all 47 species
Msp_g26583	CNGC5, ATCNGC5	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Pir_g25266	ATCNGC1, CNGC1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Pir_g33867	ATCNGC10, CNGC10, ACBK1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g37152	ATCNGC1, CNGC1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.05	OrthoFinder output from all 47 species
Pir_g44974	ATCNGC1, CNGC1	cyclic nucleotide-gated cation channel *(CNGC) &...	0.03	OrthoFinder output from all 47 species
Pir_g44975	ATCNGC3, CNGC3, CNGC3.C	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g47554	ATCNGC1, CNGC1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g51567	CNGC19, ATCNGC19	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc05g050360.3.1	ATCNGC1, CNGC1,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Solyc05g050380.4.1	ATCNGC13,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Solyc08g069140.4.1	ATCNGC14,...	cyclic nucleotide-gated cation channel (CNGC)	0.03	OrthoFinder output from all 47 species
Zm00001e012009_P001	DND1, ATCNGC2,...	cyclic nucleotide-gated cation channel (CNGC)....	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	ISS	Interproscan
MF	GO:0005261	monoatomic cation channel activity	IMP	Interproscan
MF	GO:0005261	monoatomic cation channel activity	IGI	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	IMP	Interproscan
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030551	cyclic nucleotide binding	ISS	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0008219	cell death	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010224	response to UV-B	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0040034	regulation of development, heterochronic	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	HCCA
BP	GO:0048509	regulation of meristem development	IEP	HCCA
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005821	Ion_trans_dom	40	363

External Links

No external refs found!

AT2G46450 (ATCNGC12, CNGC12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation