AT2G42940

Description : Predicted AT-hook DNA-binding family protein

Gene families : OG0000325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000325_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G42940
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00189120	evm_27.TU.AmTr_v1...	AT-hook motif nuclear-localized protein 20...	0.02	OrthoFinder output from all 47 species
AT4G22810	No alias	Predicted AT-hook DNA-binding family protein	0.04	OrthoFinder output from all 47 species
Als_g16583	No alias	AHL clade-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g33355	No alias	AHL clade-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44753.t1	Aspi01Gene44753	AHL clade-A transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0020.g015426	AHL22	AHL clade-A transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Azfi_s0054.g033669	AHL22	AHL clade-A transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
GSVIVT01016497001	AHL15, AGF2	AT-hook motif nuclear-localized protein 15...	0.04	OrthoFinder output from all 47 species
GSVIVT01019932001	No alias	AT-hook motif nuclear-localized protein 24...	0.05	OrthoFinder output from all 47 species
GSVIVT01036210001	AHL20	AT-hook motif nuclear-localized protein 19...	0.04	OrthoFinder output from all 47 species
Gb_15730	No alias	AT-hook motif nuclear-localized protein 16...	0.02	OrthoFinder output from all 47 species
LOC_Os08g44910.1	AHL20, LOC_Os08g44910	AT-hook motif nuclear-localized protein 20...	0.04	OrthoFinder output from all 47 species
Len_g06050	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g29316	No alias	AHL clade-A transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g37811	AHL15, AGF2	AHL clade-A transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0247.g026708	No alias	AHL clade-A transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Solyc07g056300.1.1	Solyc07g056300	AT-hook motif nuclear-localized protein 16...	0.04	OrthoFinder output from all 47 species
Zm00001e003878_P001	AHL20, Zm00001e003878	AT-hook motif nuclear-localized protein 20...	0.03	OrthoFinder output from all 47 species
Zm00001e014298_P001	AHL22, Zm00001e014298	AT-hook motif nuclear-localized protein 22...	0.03	OrthoFinder output from all 47 species
Zm00001e016254_P001	AHL20, Zm00001e016254	AT-hook motif nuclear-localized protein 20...	0.03	OrthoFinder output from all 47 species
Zm00001e022037_P001	AHL20, Zm00001e022037	AT-hook motif nuclear-localized protein 20...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IMP	Interproscan
BP	GO:0010528	regulation of transposition	None	Extended
BP	GO:0010529	negative regulation of transposition	IMP	Interproscan
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031057	negative regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	None	Extended
BP	GO:0031062	positive regulation of histone methylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
MF	GO:0031490	chromatin DNA binding	IDA	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0035065	regulation of histone acetylation	None	Extended
BP	GO:0035067	negative regulation of histone acetylation	IMP	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051570	regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051574	positive regulation of histone H3-K9 methylation	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900109	regulation of histone H3-K9 dimethylation	None	Extended
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IMP	Interproscan
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901983	regulation of protein acetylation	None	Extended
BP	GO:1901984	negative regulation of protein acetylation	None	Extended
BP	GO:2000756	regulation of peptidyl-lysine acetylation	None	Extended
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005175	PPC_dom	84	193

External Links

No external refs found!

AT2G42940

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation