AT2G42300

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G42300

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00129p00124210	LRL1,...	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
Adi_g084441	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g109684	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g39005	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ala_g07904	CIB1	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ala_g26066	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Als_g12122	PIL5, PIF1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g33578	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g34054	UNE12	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g50421	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aop_g08607	HEC1	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g09856	CIB1	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aop_g26245	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g29816	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g64342	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene12792.t1	HEC2, Aspi01Gene12792	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene24671.t1	LRL1, Aspi01Gene24671	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene35709.t2	Aspi01Gene35709	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene49717.t1	LRL3, Aspi01Gene49717	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene54622.t1	LRL3, Aspi01Gene54622	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62580.t1	Aspi01Gene62580	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0013.g013357	No alias	bHLH-type transcription factor & original description: CDS=1-633	0.03	OrthoFinder output from all 47 species
Azfi_s0038.g026209	No alias	bHLH-type transcription factor & original description:...	0.01	OrthoFinder output from all 47 species
Azfi_s0194.g057160	LRL3	not classified & original description: CDS=242-550	0.03	OrthoFinder output from all 47 species
Azfi_s0197.g057308	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Azfi_s0276.g061452	No alias	bHLH-type transcription factor & original description: CDS=1-1854	0.02	OrthoFinder output from all 47 species
Cba_g18078	HEC2	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.04G092700.1	Ceric.04G092700	bHLH-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.12G021200.1	PIF3, POC1,...	bHLH-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.16G038400.1	Ceric.16G038400	bHLH-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.32G068300.1	Ceric.32G068300	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Dac_g10732	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g22699	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g08656	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03638	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g23333	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g31834	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01021032001	No alias	External stimuli response.light.UV-A/blue...	0.02	OrthoFinder output from all 47 species
Gb_07156	PIF3, POC1, PAP3	transcription factor (bHLH). PIF red/far-red light...	0.01	OrthoFinder output from all 47 species
LOC_Os06g47980.1	LOC_Os06g47980	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os07g08440.1	UNE12, LOC_Os07g08440	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
LOC_Os09g25040.1	LRL1, LOC_Os09g25040	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Len_g24250	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g37679	RHD6	LHW/LHL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g47855	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g20995	BPEp, ZCW32, BPE, BPEub	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Mp6g21470.1	RSL2	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Mpzg01410.1	LRL3	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Ore_g03327	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g26644	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g43162	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Ore_g43163	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g28386	No alias	transcriptional co-activator *(FBH) & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g50240	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g13442	PIF3, POC1, PAP3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g02210	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g05246	SPT	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013831	SPT	bHLH-type transcription factor & original description: CDS=1-1485	0.03	OrthoFinder output from all 47 species
Sam_g14482	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g36377	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo405220	HEC1	RNA biosynthesis.transcriptional activation.bHLH...	0.01	OrthoFinder output from all 47 species
Smo413232	RHD6	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Smo444782	LRL2	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Solyc04g077480.3.1	Solyc04g077480	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Spa_g30265	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g30839	No alias	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Zm00001e005046_P003	PIL5, PIF1,...	transcription factor (bHLH). PIF red/far-red light...	0.02	OrthoFinder output from all 47 species
Zm00001e032950_P002	UNE12, Zm00001e032950	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	195	242

External Links

No external refs found!

AT2G42300

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation