AT2G41850 (ADPG2, PGAZAT)

Aliases : ADPG2, PGAZAT

Description : polygalacturonase abscission zone A. thaliana

Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G41850
Cluster	HCCA: Cluster_87

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00250890	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	OrthoFinder output from all 47 species
Als_g14084	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44829.t1	Aspi01Gene44829	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04883	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01032114001	QRT2	Polygalacturonase OS=Actinidia deliciosa	0.03	OrthoFinder output from all 47 species
GSVIVT01032117001	QRT2	Cell wall.pectin.modification and...	0.03	OrthoFinder output from all 47 species
GSVIVT01033303001	ADPG2, PGAZAT	Cell wall.pectin.modification and...	0.04	OrthoFinder output from all 47 species
GSVIVT01033362001	ADPG2, PGAZAT	Cell wall.pectin.modification and...	0.06	OrthoFinder output from all 47 species
GSVIVT01033364001	ADPG2, PGAZAT	Cell wall.pectin.modification and...	0.04	OrthoFinder output from all 47 species
Gb_07779	No alias	Polygalacturonase OS=Actinidia deliciosa...	0.03	OrthoFinder output from all 47 species
LOC_Os01g07790.1	QRT2, LOC_Os01g07790	Probable polygalacturonase At3g15720 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g19170.1	LOC_Os01g19170	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
LOC_Os05g50260.1	LOC_Os05g50260	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_13282g0010	No alias	Polygalacturonase OS=Actinidia deliciosa...	0.03	OrthoFinder output from all 47 species
MA_285723g0010	No alias	Polygalacturonase OS=Persea americana...	0.03	OrthoFinder output from all 47 species
MA_90135g0010	No alias	Polygalacturonase OS=Chamaecyparis obtusa...	0.02	OrthoFinder output from all 47 species
Mp3g21140.1	No alias	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Nbi_g06863	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g17999	No alias	EC_3.2 glycosylase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g24091	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g03112	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Smo78038	No alias	Cell wall.pectin.modification and...	0.03	OrthoFinder output from all 47 species
Solyc03g116580.4.1	Solyc03g116580	Probable polygalacturonase At1g80170 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Solyc08g014560.3.1	Solyc08g014560	Polygalacturonase OS=Prunus persica...	0.04	OrthoFinder output from all 47 species
Solyc12g009420.3.1	QRT2, Solyc12g009420	Polygalacturonase QRT2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Spa_g13004	No alias	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006091_P001	ADPG2, PGAZAT,...	polygalacturonase (QRT2)	0.03	OrthoFinder output from all 47 species
Zm00001e011814_P002	ADPG2, PGAZAT,...	Polygalacturonase OS=Actinidia deliciosa...	0.02	OrthoFinder output from all 47 species
Zm00001e026160_P001	Zm00001e026160	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Zm00001e026240_P001	Zm00001e026240	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Zm00001e027720_P001	Zm00001e027720	Polygalacturonase At1g48100 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Zm00001e032294_P001	Zm00001e032294	Probable polygalacturonase At1g80170 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IDA	Interproscan
MF	GO:0004650	polygalacturonase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009827	plant-type cell wall modification	None	Extended
BP	GO:0009830	cell wall modification involved in abscission	RCA	Interproscan
BP	GO:0009830	cell wall modification involved in abscission	TAS	Interproscan
BP	GO:0009838	abscission	None	Extended
BP	GO:0009900	dehiscence	None	Extended
BP	GO:0009901	anther dehiscence	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010047	fruit dehiscence	IMP	Interproscan
BP	GO:0010227	floral organ abscission	IMP	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044277	cell wall disassembly	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003993	acid phosphatase activity	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
MF	GO:0008878	glucose-1-phosphate adenylyltransferase activity	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
BP	GO:0009828	plant-type cell wall loosening	IEP	HCCA
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0016036	cellular response to phosphate starvation	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019374	galactolipid metabolic process	IEP	HCCA
BP	GO:0019375	galactolipid biosynthetic process	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
MF	GO:0046910	pectinesterase inhibitor activity	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0070566	adenylyltransferase activity	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	95	420

External Links

No external refs found!

AT2G41850 (ADPG2, PGAZAT)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation