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  5. AT2G35130

AT2G35130


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0007004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G35130

Target Alias Description ECC score Gene Family Method Actions
Aev_g19823 No alias plastidial RNA processing factor *(PPR287) & original... 0.02 OrthoFinder output from all 47 species
Ala_g26348 No alias ndhA-specific mRNA splicing factor & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g09698 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14381 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11391 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Ceric.28G053600.1 Ceric.28G053600 ndhA-specific mRNA splicing factor & original... 0.05 OrthoFinder output from all 47 species
Dcu_g12037 No alias ndhA-specific mRNA splicing factor & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g13798 No alias ndhA-specific mRNA splicing factor & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01012065001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.08 OrthoFinder output from all 47 species
Gb_35563 No alias ndhA-specific mRNA splicing factor 0.05 OrthoFinder output from all 47 species
LOC_Os02g07360.1 LOC_Os02g07360 ndhA-specific mRNA splicing factor. plastidial RNA... 0.05 OrthoFinder output from all 47 species
Mp1g28660.1 No alias ndhA-specific mRNA splicing factor. plastidial RNA... 0.07 OrthoFinder output from all 47 species
Ore_g05985 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04300 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g20465 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g17511 No alias ndhA-specific mRNA splicing factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25675 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo109632 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.04 OrthoFinder output from all 47 species
Solyc02g068760.4.1 Solyc02g068760 ndhA-specific mRNA splicing factor 0.1 OrthoFinder output from all 47 species
Spa_g07815 No alias plastidial RNA processing factor *(PPR287) & original... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009508 plastid chromosome IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009544 chloroplast ATP synthase complex IEP HCCA
BP GO:0009637 response to blue light IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016109 tetraterpenoid biosynthetic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016117 carotenoid biosynthetic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016987 sigma factor activity IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071483 cellular response to blue light IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098807 chloroplast thylakoid membrane protein complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 228 273
IPR002885 Pentatricopeptide_repeat 507 555
IPR002885 Pentatricopeptide_repeat 153 201
IPR002885 Pentatricopeptide_repeat 426 486
IPR002885 Pentatricopeptide_repeat 321 380
No external refs found!