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  5. AT2G19910

AT2G19910


Description : RNA-dependent RNA polymerase family protein


Gene families : OG0003530 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003530_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G19910
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00110240 evm_27.TU.AmTr_v1... Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g106685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12869 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26172.t1 Aspi01Gene26172 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15431 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G035200.1 Ceric.03G035200 not classified & original description: pacid=50572865... 0.02 OrthoFinder output from all 47 species
LOC_Os01g10130.1 LOC_Os01g10130 Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa... 0.15 OrthoFinder output from all 47 species
LOC_Os01g10140.2 LOC_Os01g10140 Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa... 0.09 OrthoFinder output from all 47 species
Mp5g10330.1 No alias Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g18673 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36816 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g051190.3.1 Solyc06g051190 Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc12g008420.3.1 Solyc12g008420 Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity ISS Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0016441 post-transcriptional gene silencing ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
BP GO:0001763 morphogenesis of a branching structure IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
BP GO:0001933 negative regulation of protein phosphorylation IEP HCCA
BP GO:0003002 regionalization IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
BP GO:0003156 regulation of animal organ formation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004860 protein kinase inhibitor activity IEP HCCA
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006469 negative regulation of protein kinase activity IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
BP GO:0009641 shade avoidance IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009686 gibberellin biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009886 post-embryonic animal morphogenesis IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010154 fruit development IEP HCCA
BP GO:0010158 abaxial cell fate specification IEP HCCA
BP GO:0010159 specification of animal organ position IEP HCCA
BP GO:0010160 formation of animal organ boundary IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010199 organ boundary specification between lateral organs and the meristem IEP HCCA
BP GO:0010223 secondary shoot formation IEP HCCA
BP GO:0010338 leaf formation IEP HCCA
BP GO:0010346 shoot axis formation IEP HCCA
BP GO:0010450 inflorescence meristem growth IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0016102 diterpenoid biosynthetic process IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019210 kinase inhibitor activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP HCCA
MF GO:0030332 cyclin binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033673 negative regulation of kinase activity IEP HCCA
BP GO:0035265 organ growth IEP HCCA
BP GO:0035266 meristem growth IEP HCCA
BP GO:0040009 regulation of growth rate IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0042326 negative regulation of phosphorylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0045165 cell fate commitment IEP HCCA
BP GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
BP GO:0046620 regulation of organ growth IEP HCCA
BP GO:0046622 positive regulation of organ growth IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048437 floral organ development IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048445 carpel morphogenesis IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048504 regulation of timing of animal organ formation IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048639 positive regulation of developmental growth IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048859 formation of anatomical boundary IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051348 negative regulation of transferase activity IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0071901 negative regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090691 formation of plant organ boundary IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1904030 negative regulation of cyclin-dependent protein kinase activity IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000027 regulation of animal organ morphogenesis IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 227 847
No external refs found!