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  5. AT2G05970

AT2G05970


Description : F-box family protein with a domain of unknown function (DUF295)


Gene families : OG0008562 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008562_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G05970
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT1G10110 No alias F-box family protein 0.06 OrthoFinder output from all 47 species
AT1G27580 No alias Protein of unknown function (DUF295) 0.03 OrthoFinder output from all 47 species
AT2G03560 No alias F-box family protein with a domain of unknown function (DUF295) 0.06 OrthoFinder output from all 47 species
AT2G03610 No alias F-box family protein 0.05 OrthoFinder output from all 47 species
AT2G04810 No alias Protein of unknown function (DUF295) 0.06 OrthoFinder output from all 47 species
AT2G04830 No alias Protein of unknown function (DUF295) 0.08 OrthoFinder output from all 47 species
AT2G04840 No alias Protein of unknown function (DUF295) 0.1 OrthoFinder output from all 47 species
AT2G14500 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
AT2G33200 No alias F-box family protein 0.1 OrthoFinder output from all 47 species
AT3G03726 No alias Protein of unknown function (DUF295) 0.07 OrthoFinder output from all 47 species
AT3G03730 No alias F-box family protein with a domain of unknown function (DUF295) 0.11 OrthoFinder output from all 47 species
AT3G22345 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.1 OrthoFinder output from all 47 species
AT4G10820 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
AT4G12810 No alias F-box family protein 0.1 OrthoFinder output from all 47 species
AT4G12820 No alias F-box family protein with a domain of unknown function (DUF295) 0.09 OrthoFinder output from all 47 species
AT4G14165 No alias F-box family protein-related 0.04 OrthoFinder output from all 47 species
AT4G22060 No alias F-box family protein with a domain of unknown function (DUF295) 0.11 OrthoFinder output from all 47 species
AT4G22165 No alias F-box family protein with a domain of unknown function (DUF295) 0.11 OrthoFinder output from all 47 species
AT4G22170 No alias F-box family protein with a domain of unknown function (DUF295) 0.02 OrthoFinder output from all 47 species
AT4G22660 No alias F-box family protein with a domain of unknown function (DUF295) 0.09 OrthoFinder output from all 47 species
AT5G25290 No alias F-box family protein with a domain of unknown function (DUF295) 0.09 OrthoFinder output from all 47 species
AT5G25300 No alias CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like... 0.09 OrthoFinder output from all 47 species
AT5G38270 No alias F-box family protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000311 plastid large ribosomal subunit IEP HCCA
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0046910 pectinesterase inhibitor activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR005174 DUF295 293 344
IPR001810 F-box_dom 9 50
No external refs found!