AT2G03500

Description : Homeodomain-like superfamily protein

Gene families : OG0001052 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001052_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G03500

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00093p00110710	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	OrthoFinder output from all 47 species
AMTR_s00122p00127250	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.1	OrthoFinder output from all 47 species
AT1G13300	HRS1	myb-like transcription factor family protein	0.09	OrthoFinder output from all 47 species
AT3G25790	No alias	myb-like transcription factor family protein	0.05	OrthoFinder output from all 47 species
Adi_g019107	No alias	GARP subgroup HHO transcription factor & original...	0.05	OrthoFinder output from all 47 species
Aev_g37049	No alias	GARP subgroup HHO transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ala_g23352	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g15773	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g21951	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aob_g27276	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0114.g046051	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g22464	No alias	GARP subgroup HHO transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.06G020200.1	Ceric.06G020200	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.21G045700.1	Ceric.21G045700	GARP subgroup HHO transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ceric.38G044700.1	Ceric.38G044700	GARP subgroup HHO transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dcu_g03915	No alias	GARP subgroup HHO transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dcu_g16223	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01015462001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.11	OrthoFinder output from all 47 species
GSVIVT01031804001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	OrthoFinder output from all 47 species
LOC_Os01g08160.1	LOC_Os01g08160	G2-like GARP transcription factor	0.1	OrthoFinder output from all 47 species
Lfl_g03168	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Lfl_g03258	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Mp4g15170.1	No alias	G2-like GARP transcription factor	0.02	OrthoFinder output from all 47 species
Msp_g25323	No alias	GARP subgroup HHO transcription factor & original...	0.04	OrthoFinder output from all 47 species
Pir_g14104	No alias	GARP subgroup HHO transcription factor & original...	0.07	OrthoFinder output from all 47 species
Pir_g22160	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g26211	No alias	transcriptional repressor *(NIGT) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g29341	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g37435	No alias	GARP subgroup HHO transcription factor & original...	0.03	OrthoFinder output from all 47 species
Smo402040	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.06	OrthoFinder output from all 47 species
Solyc12g006800.2.1	Solyc12g006800	G2-like GARP transcription factor	0.16	OrthoFinder output from all 47 species
Spa_g55258	No alias	GARP subgroup HHO transcription factor & original...	0.05	OrthoFinder output from all 47 species
Tin_g05995	No alias	GARP subgroup HHO transcription factor & original...	0.02	OrthoFinder output from all 47 species
Zm00001e003080_P001	Zm00001e003080	G2-like GARP transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e016724_P001	Zm00001e016724	G2-like GARP transcription factor	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004629	phospholipase C activity	IEP	HCCA
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009625	response to insect	IEP	HCCA
MF	GO:0009672	auxin:proton symporter activity	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010088	phloem development	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010439	regulation of glucosinolate biosynthetic process	IEP	HCCA
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0042762	regulation of sulfur metabolic process	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
BP	GO:0043255	regulation of carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0043455	regulation of secondary metabolic process	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048571	long-day photoperiodism	IEP	HCCA
BP	GO:0048574	long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
MF	GO:0080161	auxin transmembrane transporter activity	IEP	HCCA
BP	GO:0080162	endoplasmic reticulum to cytosol auxin transport	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:1900376	regulation of secondary metabolite biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	235	286

External Links

No external refs found!

AT2G03500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation