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  5. AT2G02150

AT2G02150


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G02150
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.04 OrthoFinder output from all 47 species
AMTR_s00106p00105070 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 OrthoFinder output from all 47 species
GSVIVT01018339001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_03162 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.02 OrthoFinder output from all 47 species
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.04 OrthoFinder output from all 47 species
Gb_08861 No alias Pentatricopeptide repeat-containing protein At1g09820... 0.04 OrthoFinder output from all 47 species
Gb_12831 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.03 OrthoFinder output from all 47 species
Gb_13926 No alias group-II intron mitochondrial splicing factor (MISF26) 0.04 OrthoFinder output from all 47 species
Gb_18022 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.02 OrthoFinder output from all 47 species
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.02 OrthoFinder output from all 47 species
Gb_23453 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_26765 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.02 OrthoFinder output from all 47 species
Gb_29383 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_30544 No alias Pentatricopeptide repeat-containing protein At2g32630... 0.04 OrthoFinder output from all 47 species
Gb_41726 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.03 OrthoFinder output from all 47 species
LOC_Os01g07610.1 LOC_Os01g07610 group-II intron mitochondrial splicing factor (MISF26) 0.04 OrthoFinder output from all 47 species
LOC_Os06g36910.1 LOC_Os06g36910 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_139384g0010 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.02 OrthoFinder output from all 47 species
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.05 OrthoFinder output from all 47 species
MA_299481g0010 EMB2745 Pentatricopeptide repeat-containing protein At5g39710... 0.01 OrthoFinder output from all 47 species
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.02 OrthoFinder output from all 47 species
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.02 OrthoFinder output from all 47 species
Solyc02g021270.3.1 Solyc02g021270 Putative pentatricopeptide repeat-containing protein... 0.09 OrthoFinder output from all 47 species
Zm00001e007886_P001 Zm00001e007886 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031053 primary miRNA processing IEP HCCA
BP GO:0031590 wybutosine metabolic process IEP HCCA
BP GO:0031591 wybutosine biosynthetic process IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032876 negative regulation of DNA endoreduplication IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048571 long-day photoperiodism IEP HCCA
BP GO:0048574 long-day photoperiodism, flowering IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901659 glycosyl compound biosynthetic process IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 327 359
IPR002885 Pentatricopeptide_repeat 432 463
IPR002885 Pentatricopeptide_repeat 365 414
IPR002885 Pentatricopeptide_repeat 470 506
IPR002885 Pentatricopeptide_repeat 260 308
IPR002885 Pentatricopeptide_repeat 541 589
IPR002885 Pentatricopeptide_repeat 612 657
IPR002885 Pentatricopeptide_repeat 229 257
IPR002885 Pentatricopeptide_repeat 685 714
IPR002885 Pentatricopeptide_repeat 510 538
IPR002885 Pentatricopeptide_repeat 196 222
No external refs found!