AT1G79040 (PSBR)

Aliases : PSBR

Description : photosystem II subunit R

Gene families : OG0002211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002211_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G79040
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
Adi_g011483	PSBR	component *(PsbR) of PS-II complex & original description: none	0.18	OrthoFinder output from all 47 species
Aev_g13057	PSBR	component *(PsbR) of PS-II complex & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g36083	PSBR	component *(PsbR) of PS-II complex & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g04077	PSBR	component *(PsbR) of PS-II complex & original description: none	0.16	OrthoFinder output from all 47 species
Als_g05205	PSBR	component *(PsbR) of PS-II complex & original description: none	0.13	OrthoFinder output from all 47 species
Aob_g00417	PSBR	component *(PsbR) of PS-II complex & original description: none	0.09	OrthoFinder output from all 47 species
Aob_g09168	PSBR	component *(PsbR) of PS-II complex & original description: none	0.07	OrthoFinder output from all 47 species
Aob_g12987	PSBR	component *(PsbR) of PS-II complex & original description: none	0.08	OrthoFinder output from all 47 species
Aob_g27127	PSBR	component *(PsbR) of PS-II complex & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g17008	PSBR	component *(PsbR) of PS-II complex & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g29630	PSBR	component *(PsbR) of PS-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene37382.t1	PSBR, Aspi01Gene37382	component *(PsbR) of PS-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g02302	PSBR	component *(PsbR) of PS-II complex & original description: none	0.06	OrthoFinder output from all 47 species
Cba_g30771	PSBR	component *(PsbR) of PS-II complex & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.16G056100.1	PSBR, Ceric.16G056100	component *(PsbR) of PS-II complex & original...	0.03	OrthoFinder output from all 47 species
Ceric.20G086200.1	PSBR, Ceric.20G086200	component *(PsbR) of PS-II complex & original...	0.15	OrthoFinder output from all 47 species
Cre06.g261000	PSBR	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.24	OrthoFinder output from all 47 species
Dac_g12213	PSBR	component *(PsbR) of PS-II complex & original description: none	0.08	OrthoFinder output from all 47 species
Dac_g32722	PSBR	component *(PsbR) of PS-II complex & original description: none	0.07	OrthoFinder output from all 47 species
Dcu_g25420	PSBR	component *(PsbR) of PS-II complex & original description: none	0.11	OrthoFinder output from all 47 species
Dcu_g28297	PSBR	component *(PsbR) of PS-II complex & original description: none	0.34	OrthoFinder output from all 47 species
Dde_g00341	PSBR	component *(PsbR) of PS-II complex & original description: none	0.1	OrthoFinder output from all 47 species
Ehy_g22404	PSBR	component *(PsbR) of PS-II complex & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01020484001	PSBR	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.04	OrthoFinder output from all 47 species
Gb_04149	PSBR	component PsbR of PS-II complex	0.12	OrthoFinder output from all 47 species
LOC_Os08g10020.1	PSBR, LOC_Os08g10020	component PsbR of PS-II complex	0.09	OrthoFinder output from all 47 species
Lfl_g16031	PSBR	component *(PsbR) of PS-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g18574	PSBR	component *(PsbR) of PS-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g19724	PSBR	component *(PsbR) of PS-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g38512	PSBR	component *(PsbR) of PS-II complex & original description: none	0.03	OrthoFinder output from all 47 species
MA_282g0010	PSBR	component PsbR of PS-II complex	0.09	OrthoFinder output from all 47 species
Mp3g05840.1	PSBR	component PsbR of PS-II complex	0.05	OrthoFinder output from all 47 species
Msp_g02196	PSBR	component *(PsbR) of PS-II complex & original description: none	0.12	OrthoFinder output from all 47 species
Nbi_g40620	PSBR	component *(PsbR) of PS-II complex & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g06143	PSBR	component *(PsbR) of PS-II complex & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g06144	PSBR	component *(PsbR) of PS-II complex & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g25679	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g31183	PSBR	component *(PsbR) of PS-II complex & original description: none	0.04	OrthoFinder output from all 47 species
Pp3c16_5650V3.1	PSBR, Pp3c16_5650	photosystem II subunit R	0.12	OrthoFinder output from all 47 species
Pp3c27_2320V3.1	PSBR, Pp3c27_2320	photosystem II subunit R	0.02	OrthoFinder output from all 47 species
Pp3c27_2340V3.1	PSBR, Pp3c27_2340	photosystem II subunit R	0.07	OrthoFinder output from all 47 species
Ppi_g12785	PSBR	component *(PsbR) of PS-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g12793	PSBR	component *(PsbR) of PS-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g27322	PSBR	component *(PsbR) of PS-II complex & original description: none	0.07	OrthoFinder output from all 47 species
Ppi_g27323	PSBR	component *(PsbR) of PS-II complex & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0170.g024344	PSBR	component *(PsbR) of PS-II complex & original...	0.06	OrthoFinder output from all 47 species
Sam_g12723	No alias	component *(PsbR) of PS-II complex & original description: none	0.06	OrthoFinder output from all 47 species
Solyc07g066310.3.1	PSBR, Solyc07g066310	component PsbR of PS-II complex	0.19	OrthoFinder output from all 47 species
Spa_g03368	PSBR	component *(PsbR) of PS-II complex & original description: none	0.11	OrthoFinder output from all 47 species
Tin_g07988	PSBR	component *(PsbR) of PS-II complex & original description: none	0.11	OrthoFinder output from all 47 species
Zm00001e021601_P001	PSBR, Zm00001e021601	component PsbR of PS-II complex	0.15	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	None	Extended
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006534	cysteine metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009070	serine family amino acid biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	ISS	Interproscan
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009637	response to blue light	RCA	Interproscan
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IDA	Interproscan
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010114	response to red light	RCA	Interproscan
BP	GO:0010155	regulation of proton transport	RCA	Interproscan
BP	GO:0010207	photosystem II assembly	None	Extended
BP	GO:0010218	response to far red light	RCA	Interproscan
BP	GO:0010270	photosystem II oxygen evolving complex assembly	IEP	Interproscan
BP	GO:0015979	photosynthesis	ISS	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0019344	cysteine biosynthetic process	RCA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034285	response to disaccharide	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034762	regulation of transmembrane transport	None	Extended
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043269	regulation of monoatomic ion transport	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008187	poly-pyrimidine tract binding	IEP	HCCA
MF	GO:0008266	poly(U) RNA binding	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009543	chloroplast thylakoid lumen	IEP	HCCA
BP	GO:0009595	detection of biotic stimulus	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009768	photosynthesis, light harvesting in photosystem I	IEP	HCCA
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	HCCA
CC	GO:0009782	photosystem I antenna complex	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010205	photoinhibition	IEP	HCCA
MF	GO:0010242	oxygen evolving activity	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016168	chlorophyll binding	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
CC	GO:0030076	light-harvesting complex	IEP	HCCA
CC	GO:0030095	chloroplast photosystem II	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
CC	GO:0031978	plastid thylakoid lumen	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	HCCA
BP	GO:0042549	photosystem II stabilization	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0043155	negative regulation of photosynthesis, light reaction	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0043900	obsolete regulation of multi-organism process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1905156	negative regulation of photosynthesis	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006814	PSII_PsbR	42	139

External Links

No external refs found!

AT1G79040 (PSBR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation