Coexpression cluster: Cluster_83 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042170 plastid membrane 67.12% (49/73) 5.55 0.0 0.0
GO:0019867 outer membrane 67.12% (49/73) 5.68 0.0 0.0
GO:0031090 organelle membrane 68.49% (50/73) 4.17 0.0 0.0
GO:0098588 bounding membrane of organelle 68.49% (50/73) 4.44 0.0 0.0
GO:0009579 thylakoid 63.01% (46/73) 5.74 0.0 0.0
GO:0055035 plastid thylakoid membrane 67.12% (49/73) 5.87 0.0 0.0
GO:0009536 plastid 91.78% (67/73) 2.73 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 67.12% (49/73) 5.88 0.0 0.0
GO:0009534 chloroplast thylakoid 57.53% (42/73) 6.23 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 63.01% (46/73) 4.14 0.0 0.0
GO:0009507 chloroplast 91.78% (67/73) 2.76 0.0 0.0
GO:0031968 organelle outer membrane 67.12% (49/73) 5.68 0.0 0.0
GO:0043228 non-membrane-bounded organelle 63.01% (46/73) 4.14 0.0 0.0
GO:0031976 plastid thylakoid 57.53% (42/73) 6.23 0.0 0.0
GO:0042651 thylakoid membrane 68.49% (50/73) 5.85 0.0 0.0
GO:0034357 photosynthetic membrane 68.49% (50/73) 5.85 0.0 0.0
GO:0015979 photosynthesis 41.1% (30/73) 5.91 0.0 0.0
GO:0006364 rRNA processing 35.62% (26/73) 5.4 0.0 0.0
GO:0016072 rRNA metabolic process 35.62% (26/73) 5.38 0.0 0.0
GO:0019344 cysteine biosynthetic process 34.25% (25/73) 5.53 0.0 0.0
GO:0006534 cysteine metabolic process 34.25% (25/73) 5.52 0.0 0.0
GO:0009070 serine family amino acid biosynthetic process 34.25% (25/73) 5.5 0.0 0.0
GO:0019684 photosynthesis, light reaction 31.51% (23/73) 5.88 0.0 0.0
GO:0010207 photosystem II assembly 31.51% (23/73) 5.63 0.0 0.0
GO:0009069 serine family amino acid metabolic process 34.25% (25/73) 5.21 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 42.47% (31/73) 4.29 0.0 0.0
GO:0000097 sulfur amino acid biosynthetic process 34.25% (25/73) 4.99 0.0 0.0
GO:0044272 sulfur compound biosynthetic process 38.36% (28/73) 4.48 0.0 0.0
GO:0000096 sulfur amino acid metabolic process 34.25% (25/73) 4.83 0.0 0.0
GO:0034470 ncRNA processing 35.62% (26/73) 4.62 0.0 0.0
GO:1901607 alpha-amino acid biosynthetic process 34.25% (25/73) 4.67 0.0 0.0
GO:0035304 regulation of protein dephosphorylation 26.03% (19/73) 5.69 0.0 0.0
GO:0035303 regulation of dephosphorylation 26.03% (19/73) 5.68 0.0 0.0
GO:0008652 amino acid biosynthetic process 34.25% (25/73) 4.53 0.0 0.0
GO:0010287 plastoglobule 21.92% (16/73) 6.48 0.0 0.0
GO:0034660 ncRNA metabolic process 35.62% (26/73) 4.37 0.0 0.0
GO:0098796 membrane protein complex 32.88% (24/73) 4.64 0.0 0.0
GO:0009521 photosystem 17.81% (13/73) 7.41 0.0 0.0
GO:0032991 protein-containing complex 47.95% (35/73) 3.29 0.0 0.0
GO:0016168 chlorophyll binding 17.81% (13/73) 7.27 0.0 0.0
GO:0006790 sulfur compound metabolic process 38.36% (28/73) 3.91 0.0 0.0
GO:0046906 tetrapyrrole binding 19.18% (14/73) 6.82 0.0 0.0
GO:0030076 light-harvesting complex 16.44% (12/73) 7.51 0.0 0.0
GO:1901605 alpha-amino acid metabolic process 34.25% (25/73) 4.22 0.0 0.0
GO:0051174 regulation of phosphorus metabolic process 26.03% (19/73) 5.2 0.0 0.0
GO:0019220 regulation of phosphate metabolic process 26.03% (19/73) 5.2 0.0 0.0
GO:0031399 regulation of protein modification process 26.03% (19/73) 5.16 0.0 0.0
GO:0016020 membrane 71.23% (52/73) 2.07 0.0 0.0
GO:0065003 protein-containing complex assembly 31.51% (23/73) 4.21 0.0 0.0
GO:0043933 protein-containing complex organization 31.51% (23/73) 4.17 0.0 0.0
GO:0006520 amino acid metabolic process 34.25% (25/73) 3.85 0.0 0.0
GO:0006396 RNA processing 35.62% (26/73) 3.66 0.0 0.0
GO:0051246 regulation of protein metabolic process 26.03% (19/73) 4.67 0.0 0.0
GO:0098807 chloroplast thylakoid membrane protein complex 15.07% (11/73) 7.07 0.0 0.0
GO:0009657 plastid organization 26.03% (19/73) 4.57 0.0 0.0
GO:0009941 chloroplast envelope 30.14% (22/73) 3.96 0.0 0.0
GO:0010155 regulation of proton transport 17.81% (13/73) 6.0 0.0 0.0
GO:0009526 plastid envelope 30.14% (22/73) 3.95 0.0 0.0
GO:0044237 cellular metabolic process 75.34% (55/73) 1.66 0.0 0.0
GO:0046394 carboxylic acid biosynthetic process 35.62% (26/73) 3.43 0.0 0.0
GO:1904062 regulation of monoatomic cation transmembrane transport 17.81% (13/73) 5.96 0.0 0.0
GO:0031967 organelle envelope 30.14% (22/73) 3.79 0.0 0.0
GO:0031975 envelope 30.14% (22/73) 3.79 0.0 0.0
GO:0016053 organic acid biosynthetic process 35.62% (26/73) 3.3 0.0 0.0
GO:0009538 photosystem I reaction center 10.96% (8/73) 8.11 0.0 0.0
GO:0022607 cellular component assembly 31.51% (23/73) 3.61 0.0 0.0
GO:0034765 regulation of monoatomic ion transmembrane transport 17.81% (13/73) 5.48 0.0 0.0
GO:0009523 photosystem II 12.33% (9/73) 7.21 0.0 0.0
GO:0034762 regulation of transmembrane transport 17.81% (13/73) 5.38 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 36.99% (27/73) 2.96 0.0 0.0
GO:0010218 response to far red light 16.44% (12/73) 5.52 0.0 0.0
GO:0016070 RNA metabolic process 36.99% (27/73) 2.89 0.0 0.0
GO:0010114 response to red light 16.44% (12/73) 5.45 0.0 0.0
GO:0043269 regulation of monoatomic ion transport 17.81% (13/73) 5.12 0.0 0.0
GO:0044283 small molecule biosynthetic process 35.62% (26/73) 2.95 0.0 0.0
GO:0043436 oxoacid metabolic process 41.1% (30/73) 2.62 0.0 0.0
GO:0030095 chloroplast photosystem II 10.96% (8/73) 7.32 0.0 0.0
GO:0008152 metabolic process 75.34% (55/73) 1.4 0.0 0.0
GO:0006082 organic acid metabolic process 41.1% (30/73) 2.58 0.0 0.0
GO:0009637 response to blue light 16.44% (12/73) 5.15 0.0 0.0
GO:0051049 regulation of transport 17.81% (13/73) 4.81 0.0 0.0
GO:0006807 nitrogen compound metabolic process 60.27% (44/73) 1.7 0.0 0.0
GO:0009543 chloroplast thylakoid lumen 13.7% (10/73) 5.74 0.0 0.0
GO:0031978 plastid thylakoid lumen 13.7% (10/73) 5.74 0.0 0.0
GO:0055080 monoatomic cation homeostasis 17.81% (13/73) 4.56 0.0 0.0
GO:0032879 regulation of localization 17.81% (13/73) 4.53 0.0 0.0
GO:0050801 monoatomic ion homeostasis 17.81% (13/73) 4.52 0.0 0.0
GO:0019752 carboxylic acid metabolic process 36.99% (27/73) 2.54 0.0 0.0
GO:0009987 cellular process 79.45% (58/73) 1.16 0.0 0.0
GO:0030003 cellular monoatomic cation homeostasis 16.44% (12/73) 4.78 0.0 0.0
GO:0009642 response to light intensity 19.18% (14/73) 4.23 0.0 0.0
GO:0009644 response to high light intensity 17.81% (13/73) 4.46 0.0 0.0
GO:0006873 cellular monoatomic ion homeostasis 16.44% (12/73) 4.74 0.0 0.0
GO:0044281 small molecule metabolic process 43.84% (32/73) 2.18 0.0 0.0
GO:0031977 thylakoid lumen 13.7% (10/73) 5.43 0.0 0.0
GO:0055082 cellular chemical homeostasis 16.44% (12/73) 4.64 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 42.47% (31/73) 2.18 0.0 0.0
GO:0019725 cellular homeostasis 16.44% (12/73) 4.51 0.0 0.0
GO:0090304 nucleic acid metabolic process 36.99% (27/73) 2.38 0.0 0.0
GO:0048878 chemical homeostasis 17.81% (13/73) 4.18 0.0 0.0
GO:0046483 heterocycle metabolic process 43.84% (32/73) 2.02 0.0 0.0
GO:0042592 homeostatic process 17.81% (13/73) 4.09 0.0 0.0
GO:0009773 photosynthetic electron transport in photosystem I 10.96% (8/73) 5.92 0.0 0.0
GO:0050794 regulation of cellular process 49.32% (36/73) 1.79 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 43.84% (32/73) 1.98 0.0 0.0
GO:0044249 cellular biosynthetic process 43.84% (32/73) 1.92 0.0 0.0
GO:0009767 photosynthetic electron transport chain 10.96% (8/73) 5.54 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 43.84% (32/73) 1.89 0.0 0.0
GO:0009744 response to sucrose 15.07% (11/73) 4.32 0.0 0.0
GO:0034285 response to disaccharide 15.07% (11/73) 4.31 0.0 0.0
GO:0044238 primary metabolic process 60.27% (44/73) 1.38 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 43.84% (32/73) 1.82 0.0 0.0
GO:0065007 biological regulation 52.05% (38/73) 1.53 0.0 0.0
GO:0031323 regulation of cellular metabolic process 35.62% (26/73) 2.1 0.0 0.0
GO:0006996 organelle organization 27.4% (20/73) 2.57 0.0 0.0
GO:0022900 electron transport chain 10.96% (8/73) 5.06 0.0 0.0
GO:0009416 response to light stimulus 26.03% (19/73) 2.62 0.0 0.0
GO:0050789 regulation of biological process 49.32% (36/73) 1.56 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 93.15% (68/73) 0.63 0.0 0.0
GO:0043227 membrane-bounded organelle 93.15% (68/73) 0.63 0.0 0.0
GO:0009743 response to carbohydrate 16.44% (12/73) 3.66 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 45.21% (33/73) 1.67 0.0 0.0
GO:0071704 organic substance metabolic process 61.64% (45/73) 1.23 0.0 0.0
GO:0043229 intracellular organelle 93.15% (68/73) 0.62 0.0 0.0
GO:0043226 organelle 93.15% (68/73) 0.62 0.0 0.0
GO:0009058 biosynthetic process 43.84% (32/73) 1.68 0.0 0.0
GO:0009314 response to radiation 26.03% (19/73) 2.53 0.0 0.0
GO:0009639 response to red or far red light 16.44% (12/73) 3.55 0.0 0.0
GO:1901576 organic substance biosynthetic process 42.47% (31/73) 1.7 0.0 0.0
GO:0009522 photosystem I 5.48% (4/73) 7.98 0.0 0.0
GO:0019222 regulation of metabolic process 35.62% (26/73) 1.85 0.0 0.0
GO:0051171 regulation of nitrogen compound metabolic process 31.51% (23/73) 2.03 0.0 0.0
GO:0016043 cellular component organization 32.88% (24/73) 1.95 0.0 0.0
GO:0080090 regulation of primary metabolic process 31.51% (23/73) 1.93 0.0 0.0
GO:0071840 cellular component organization or biogenesis 32.88% (24/73) 1.82 0.0 0.0
GO:0006740 NADPH regeneration 10.96% (8/73) 4.05 0.0 0.0
GO:0009654 photosystem II oxygen evolving complex 5.48% (4/73) 6.86 0.0 0.0
GO:0006739 NADP metabolic process 10.96% (8/73) 4.03 0.0 0.0
GO:0046496 nicotinamide nucleotide metabolic process 10.96% (8/73) 3.99 0.0 0.0
GO:0019362 pyridine nucleotide metabolic process 10.96% (8/73) 3.96 0.0 0.0
GO:0072524 pyridine-containing compound metabolic process 10.96% (8/73) 3.91 0.0 0.0
GO:0042548 regulation of photosynthesis, light reaction 5.48% (4/73) 6.57 0.0 0.0
GO:0043170 macromolecule metabolic process 42.47% (31/73) 1.38 0.0 0.0
GO:0060255 regulation of macromolecule metabolic process 30.14% (22/73) 1.8 0.0 1e-06
GO:0043467 regulation of generation of precursor metabolites and energy 5.48% (4/73) 6.4 0.0 1e-06
GO:0009768 photosynthesis, light harvesting in photosystem I 4.11% (3/73) 7.83 0.0 1e-06
GO:0042549 photosystem II stabilization 4.11% (3/73) 7.83 0.0 1e-06
GO:0006098 pentose-phosphate shunt 9.59% (7/73) 3.91 0.0 2e-06
GO:0015995 chlorophyll biosynthetic process 8.22% (6/73) 4.37 0.0 2e-06
GO:0051156 glucose 6-phosphate metabolic process 9.59% (7/73) 3.86 1e-06 2e-06
GO:0010109 regulation of photosynthesis 5.48% (4/73) 5.86 1e-06 3e-06
GO:0006779 porphyrin-containing compound biosynthetic process 8.22% (6/73) 4.07 2e-06 6e-06
GO:0033014 tetrapyrrole biosynthetic process 8.22% (6/73) 4.03 2e-06 7e-06
GO:0046148 pigment biosynthetic process 9.59% (7/73) 3.51 3e-06 1e-05
GO:0003727 single-stranded RNA binding 5.48% (4/73) 5.21 4e-06 1.6e-05
GO:0009628 response to abiotic stimulus 28.77% (21/73) 1.52 6e-06 2.3e-05
GO:0015994 chlorophyll metabolic process 8.22% (6/73) 3.73 6e-06 2.3e-05
GO:0009765 photosynthesis, light harvesting 4.11% (3/73) 6.34 6e-06 2.4e-05
GO:0010242 oxygen evolving activity 2.74% (2/73) 8.57 7e-06 2.5e-05
GO:0009783 photosystem II antenna complex 2.74% (2/73) 8.57 7e-06 2.5e-05
GO:0009965 leaf morphogenesis 8.22% (6/73) 3.6 1.1e-05 3.9e-05
GO:0042440 pigment metabolic process 9.59% (7/73) 3.17 1.3e-05 4.7e-05
GO:0009735 response to cytokinin 8.22% (6/73) 3.51 1.5e-05 5.5e-05
GO:0006778 porphyrin-containing compound metabolic process 8.22% (6/73) 3.51 1.5e-05 5.5e-05
GO:0033013 tetrapyrrole metabolic process 8.22% (6/73) 3.49 1.6e-05 5.7e-05
GO:0008266 poly(U) RNA binding 4.11% (3/73) 5.9 1.7e-05 5.9e-05
GO:0008187 poly-pyrimidine tract binding 4.11% (3/73) 5.9 1.7e-05 5.9e-05
GO:0030093 chloroplast photosystem I 2.74% (2/73) 7.98 2.1e-05 7.3e-05
GO:0042793 plastid transcription 5.48% (4/73) 4.42 3.8e-05 0.000133
GO:0010033 response to organic substance 23.29% (17/73) 1.54 5e-05 0.000174
GO:0006163 purine nucleotide metabolic process 10.96% (8/73) 2.54 6.9e-05 0.000239
GO:0072521 purine-containing compound metabolic process 10.96% (8/73) 2.48 9.4e-05 0.000325
GO:0010196 nonphotochemical quenching 2.74% (2/73) 6.76 0.000143 0.000487
GO:1990066 energy quenching 2.74% (2/73) 6.76 0.000143 0.000487
GO:0016109 tetraterpenoid biosynthetic process 5.48% (4/73) 3.91 0.00015 0.000506
GO:0016117 carotenoid biosynthetic process 5.48% (4/73) 3.91 0.00015 0.000506
GO:1901363 heterocyclic compound binding 26.03% (19/73) 1.3 0.000153 0.000509
GO:0009117 nucleotide metabolic process 12.33% (9/73) 2.19 0.000153 0.000511
GO:0006753 nucleoside phosphate metabolic process 12.33% (9/73) 2.18 0.000157 0.000521
GO:1905392 plant organ morphogenesis 8.22% (6/73) 2.89 0.000163 0.000523
GO:0051667 establishment of plastid localization 5.48% (4/73) 3.88 0.000162 0.000524
GO:0009902 chloroplast relocation 5.48% (4/73) 3.88 0.000162 0.000524
GO:0009570 chloroplast stroma 10.96% (8/73) 2.36 0.000161 0.000526
GO:0009532 plastid stroma 10.96% (8/73) 2.36 0.000161 0.000526
GO:0019750 chloroplast localization 5.48% (4/73) 3.86 0.000168 0.000533
GO:0051644 plastid localization 5.48% (4/73) 3.86 0.000168 0.000533
GO:0097159 organic cyclic compound binding 26.03% (19/73) 1.29 0.000167 0.000533
GO:0050790 regulation of catalytic activity 6.85% (5/73) 3.27 0.000177 0.000551
GO:0010027 thylakoid membrane organization 6.85% (5/73) 3.27 0.000177 0.000551
GO:0009668 plastid membrane organization 6.85% (5/73) 3.27 0.000177 0.000551
GO:0051656 establishment of organelle localization 5.48% (4/73) 3.84 0.000181 0.000555
GO:0016116 carotenoid metabolic process 5.48% (4/73) 3.84 0.000181 0.000555
GO:0016108 tetraterpenoid metabolic process 5.48% (4/73) 3.84 0.000181 0.000555
GO:1902680 positive regulation of RNA biosynthetic process 9.59% (7/73) 2.56 0.000189 0.00057
GO:1903508 positive regulation of nucleic acid-templated transcription 9.59% (7/73) 2.56 0.000189 0.00057
GO:0045893 positive regulation of DNA-templated transcription 9.59% (7/73) 2.56 0.000189 0.00057
GO:0009533 chloroplast stromal thylakoid 2.74% (2/73) 6.57 0.00019 0.000572
GO:0019637 organophosphate metabolic process 15.07% (11/73) 1.87 0.000194 0.000581
GO:0051254 positive regulation of RNA metabolic process 9.59% (7/73) 2.54 0.000199 0.000593
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 9.59% (7/73) 2.51 0.000224 0.000664
GO:0061024 membrane organization 6.85% (5/73) 3.17 0.000238 0.0007
GO:0043085 positive regulation of catalytic activity 5.48% (4/73) 3.73 0.000239 0.000702
GO:1901135 carbohydrate derivative metabolic process 13.7% (10/73) 1.95 0.000241 0.000703
GO:0010205 photoinhibition 2.74% (2/73) 6.4 0.000244 0.000706
GO:0043155 negative regulation of photosynthesis, light reaction 2.74% (2/73) 6.4 0.000244 0.000706
GO:0010557 positive regulation of macromolecule biosynthetic process 9.59% (7/73) 2.49 0.000252 0.000725
GO:0018130 heterocycle biosynthetic process 13.7% (10/73) 1.94 0.000257 0.000729
GO:0006796 phosphate-containing compound metabolic process 17.81% (13/73) 1.62 0.000256 0.00073
GO:0044093 positive regulation of molecular function 5.48% (4/73) 3.71 0.000256 0.000732
GO:0031328 positive regulation of cellular biosynthetic process 9.59% (7/73) 2.47 0.000272 0.000767
GO:0006793 phosphorus metabolic process 17.81% (13/73) 1.6 0.000293 0.000821
GO:0010206 photosystem II repair 2.74% (2/73) 6.24 0.000305 0.000848
GO:0030091 protein repair 2.74% (2/73) 6.24 0.000305 0.000848
GO:0055086 nucleobase-containing small molecule metabolic process 12.33% (9/73) 2.04 0.000321 0.000888
GO:0051173 positive regulation of nitrogen compound metabolic process 9.59% (7/73) 2.43 0.000324 0.000892
GO:0010604 positive regulation of macromolecule metabolic process 9.59% (7/73) 2.4 0.000357 0.000978
GO:1990204 oxidoreductase complex 5.48% (4/73) 3.58 0.000361 0.000986
GO:0031325 positive regulation of cellular metabolic process 9.59% (7/73) 2.39 0.000379 0.001028
GO:0009658 chloroplast organization 6.85% (5/73) 3.02 0.000391 0.001052
GO:0019438 aromatic compound biosynthetic process 15.07% (11/73) 1.75 0.00039 0.001054
GO:1905156 negative regulation of photosynthesis 2.74% (2/73) 5.98 0.000446 0.001194
GO:0065009 regulation of molecular function 6.85% (5/73) 2.96 0.000464 0.001238
GO:0008150 biological_process 90.41% (66/73) 0.28 0.000567 0.001506
GO:0046777 protein autophosphorylation 5.48% (4/73) 3.37 0.000627 0.001658
GO:1901700 response to oxygen-containing compound 19.18% (14/73) 1.41 0.000665 0.001751
GO:0006636 unsaturated fatty acid biosynthetic process 4.11% (3/73) 4.02 0.000851 0.002219
GO:0033559 unsaturated fatty acid metabolic process 4.11% (3/73) 4.02 0.000851 0.002219
GO:0009891 positive regulation of biosynthetic process 9.59% (7/73) 2.19 0.000865 0.002247
GO:0006351 DNA-templated transcription 5.48% (4/73) 3.11 0.001226 0.003141
GO:0097659 nucleic acid-templated transcription 5.48% (4/73) 3.11 0.001226 0.003141
GO:0051640 organelle localization 5.48% (4/73) 3.11 0.001226 0.003141
GO:0009893 positive regulation of metabolic process 9.59% (7/73) 2.1 0.001236 0.003154
GO:0042221 response to chemical 24.66% (18/73) 1.1 0.001255 0.003188
GO:0044271 cellular nitrogen compound biosynthetic process 13.7% (10/73) 1.64 0.001303 0.003296
GO:0005488 binding 36.99% (27/73) 0.81 0.001338 0.00337
GO:0031408 oxylipin biosynthetic process 2.74% (2/73) 5.11 0.001534 0.003848
GO:1901362 organic cyclic compound biosynthetic process 15.07% (11/73) 1.49 0.001698 0.004241
GO:0031407 oxylipin metabolic process 2.74% (2/73) 4.98 0.001827 0.004544
GO:0050896 response to stimulus 35.62% (26/73) 0.78 0.002426 0.005983
GO:0048522 positive regulation of cellular process 9.59% (7/73) 1.93 0.002421 0.005996
GO:1901918 negative regulation of exoribonuclease activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:1905777 regulation of exonuclease activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:0032074 negative regulation of nuclease activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:1905778 negative regulation of exonuclease activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:0051537 2 iron, 2 sulfur cluster binding 1.37% (1/73) 8.57 0.00264 0.006104
GO:0045550 geranylgeranyl reductase activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:1901917 regulation of exoribonuclease activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:0048529 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:0046406 magnesium protoporphyrin IX methyltransferase activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:0052880 oxidoreductase activity, acting on diphenols and related substances as donors, with copper protein as acceptor 1.37% (1/73) 8.57 0.00264 0.006104
GO:0009496 plastoquinol--plastocyanin reductase activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:0032069 regulation of nuclease activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:0009780 photosynthetic NADP+ reduction 1.37% (1/73) 8.57 0.00264 0.006104
GO:0060701 negative regulation of ribonuclease activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:0060700 regulation of ribonuclease activity 1.37% (1/73) 8.57 0.00264 0.006104
GO:0030154 cell differentiation 8.22% (6/73) 2.12 0.00262 0.006436
GO:0042742 defense response to bacterium 6.85% (5/73) 2.37 0.002842 0.006547
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 5.48% (4/73) 2.73 0.00314 0.007176
GO:0019682 glyceraldehyde-3-phosphate metabolic process 5.48% (4/73) 2.73 0.00314 0.007176
GO:0009240 isopentenyl diphosphate biosynthetic process 5.48% (4/73) 2.71 0.003341 0.007578
GO:0046490 isopentenyl diphosphate metabolic process 5.48% (4/73) 2.71 0.003341 0.007578
GO:0016114 terpenoid biosynthetic process 5.48% (4/73) 2.55 0.004867 0.010998
GO:0080085 signal recognition particle, chloroplast targeting 1.37% (1/73) 7.57 0.005272 0.011779
GO:0010270 photosystem II oxygen evolving complex assembly 1.37% (1/73) 7.57 0.005272 0.011779
GO:0009782 photosystem I antenna complex 1.37% (1/73) 7.57 0.005272 0.011779
GO:0019216 regulation of lipid metabolic process 2.74% (2/73) 4.04 0.006599 0.014686
GO:0006721 terpenoid metabolic process 5.48% (4/73) 2.42 0.006722 0.014905
GO:0006633 fatty acid biosynthetic process 4.11% (3/73) 2.96 0.006845 0.015121
GO:0008299 isoprenoid biosynthetic process 5.48% (4/73) 2.36 0.007759 0.017075
GO:0009517 PSII associated light-harvesting complex II 1.37% (1/73) 6.98 0.007898 0.017128
GO:0009503 thylakoid light-harvesting complex 1.37% (1/73) 6.98 0.007898 0.017128
GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity 1.37% (1/73) 6.98 0.007898 0.017128
GO:0042550 photosystem I stabilization 1.37% (1/73) 6.98 0.007898 0.017128
GO:0110165 cellular anatomical entity 94.52% (69/73) 0.16 0.008051 0.017396
GO:0032774 RNA biosynthetic process 5.48% (4/73) 2.33 0.00841 0.018104
GO:0048518 positive regulation of biological process 9.59% (7/73) 1.58 0.008979 0.019191
GO:0009617 response to bacterium 6.85% (5/73) 1.97 0.008964 0.019228
GO:0009653 anatomical structure morphogenesis 10.96% (8/73) 1.43 0.009494 0.020217
GO:0019758 glycosinolate biosynthetic process 4.11% (3/73) 2.75 0.010199 0.021563
GO:0019761 glucosinolate biosynthetic process 4.11% (3/73) 2.75 0.010199 0.021563
GO:0006720 isoprenoid metabolic process 5.48% (4/73) 2.24 0.010245 0.021583
GO:0015717 triose phosphate transport 1.37% (1/73) 6.57 0.010518 0.021924
GO:0035436 triose phosphate transmembrane transport 1.37% (1/73) 6.57 0.010518 0.021924
GO:0071917 triose-phosphate transmembrane transporter activity 1.37% (1/73) 6.57 0.010518 0.021924
GO:0048869 cellular developmental process 8.22% (6/73) 1.69 0.010653 0.022129
GO:0006081 cellular aldehyde metabolic process 5.48% (4/73) 2.22 0.01091 0.022583
GO:0048046 apoplast 5.48% (4/73) 2.21 0.011138 0.022974
GO:0010310 regulation of hydrogen peroxide metabolic process 4.11% (3/73) 2.61 0.013194 0.02712
GO:0042879 aldonate transmembrane transporter activity 1.37% (1/73) 5.98 0.015735 0.031051
GO:0015120 phosphoglycerate transmembrane transporter activity 1.37% (1/73) 5.98 0.015735 0.031051
GO:0042873 aldonate transmembrane transport 1.37% (1/73) 5.98 0.015735 0.031051
GO:0050821 protein stabilization 1.37% (1/73) 5.98 0.015735 0.031051
GO:0051540 metal cluster binding 1.37% (1/73) 5.98 0.015735 0.031051
GO:0010117 photoprotection 1.37% (1/73) 5.98 0.015735 0.031051
GO:0009643 photosynthetic acclimation 1.37% (1/73) 5.98 0.015735 0.031051
GO:0015713 phosphoglycerate transmembrane transport 1.37% (1/73) 5.98 0.015735 0.031051
GO:0051536 iron-sulfur cluster binding 1.37% (1/73) 5.98 0.015735 0.031051
GO:0031647 regulation of protein stability 1.37% (1/73) 5.98 0.015735 0.031051
GO:0017038 protein import 1.37% (1/73) 5.98 0.015735 0.031051
GO:0045038 protein import into chloroplast thylakoid membrane 1.37% (1/73) 5.98 0.015735 0.031051
GO:0016491 oxidoreductase activity 9.59% (7/73) 1.41 0.01614 0.031744
GO:2000377 regulation of reactive oxygen species metabolic process 4.11% (3/73) 2.49 0.016425 0.031985
GO:0019760 glucosinolate metabolic process 4.11% (3/73) 2.49 0.016425 0.031985
GO:0019757 glycosinolate metabolic process 4.11% (3/73) 2.49 0.016425 0.031985
GO:0006612 protein targeting to membrane 5.48% (4/73) 2.03 0.016647 0.032206
GO:0072330 monocarboxylic acid biosynthetic process 6.85% (5/73) 1.75 0.016608 0.032237
GO:0072657 protein localization to membrane 5.48% (4/73) 2.02 0.017095 0.032859
GO:0090150 establishment of protein localization to membrane 5.48% (4/73) 2.02 0.017095 0.032859
GO:0000165 MAPK cascade 4.11% (3/73) 2.46 0.017296 0.033136
GO:0051668 localization within membrane 5.48% (4/73) 2.01 0.017399 0.033225
GO:0008654 phospholipid biosynthetic process 5.48% (4/73) 1.97 0.019288 0.036715
GO:0015038 glutathione disulfide oxidoreductase activity 1.37% (1/73) 5.57 0.020926 0.039579
GO:0010019 chloroplast-nucleus signaling pathway 1.37% (1/73) 5.57 0.020926 0.039579
GO:0006644 phospholipid metabolic process 5.48% (4/73) 1.89 0.02289 0.043156
GO:0003723 RNA binding 5.48% (4/73) 1.89 0.023253 0.043701
GO:0071484 cellular response to light intensity 1.37% (1/73) 5.4 0.023511 0.043907
GO:0016744 transketolase or transaldolase activity 1.37% (1/73) 5.4 0.023511 0.043907
GO:0043900 obsolete regulation of multi-organism process 2.74% (2/73) 3.07 0.023703 0.044125
GO:0006090 pyruvate metabolic process 5.48% (4/73) 1.87 0.024176 0.044866
GO:0006468 protein phosphorylation 5.48% (4/73) 1.85 0.025313 0.046829
GO:0009073 aromatic amino acid family biosynthetic process 2.74% (2/73) 3.01 0.025695 0.047388
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_8 0.111 OrthoFinder output from all 47 species Compare
Abrodictyum obscurum HCCA Cluster_48 0.04 OrthoFinder output from all 47 species Compare
Abrodictyum obscurum HCCA Cluster_61 0.043 OrthoFinder output from all 47 species Compare
Abrodictyum obscurum HCCA Cluster_141 0.051 OrthoFinder output from all 47 species Compare
Abrodictyum obscurum HCCA Cluster_168 0.017 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_2 0.016 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_7 0.076 OrthoFinder output from all 47 species Compare
Actinostachys digitata HCCA Cluster_274 0.095 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_2 0.031 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_53 0.022 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_54 0.062 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_68 0.023 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_96 0.024 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_47 0.027 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_74 0.036 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_81 0.037 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_90 0.047 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_6 0.017 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_9 0.022 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_39 0.028 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_126 0.216 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_5 0.016 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_37 0.031 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_130 0.015 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_213 0.057 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_225 0.121 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_4 0.046 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_16 0.019 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_36 0.067 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_271 0.022 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_278 0.023 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_305 0.026 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_322 0.046 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_14 0.028 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_89 0.022 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_105 0.073 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_30 0.016 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_37 0.016 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_102 0.209 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_8 0.02 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_10 0.045 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_240 0.019 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_288 0.034 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_37 0.041 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_46 0.027 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_81 0.016 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_28 0.235 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_63 0.017 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_12 0.035 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_99 0.02 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_103 0.019 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_126 0.173 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_148 0.017 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_26 0.032 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_28 0.039 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_122 0.151 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_12 0.024 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_25 0.12 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_26 0.027 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_60 0.041 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_207 0.033 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_211 0.304 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_114 0.072 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_119 0.03 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_185 0.015 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_5 0.041 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_15 0.034 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_24 0.116 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_77 0.02 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_39 0.023 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_88 0.16 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_24 0.049 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_43 0.114 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_48 0.016 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_61 0.022 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_116 0.028 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_148 0.02 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_3 0.034 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_6 0.017 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_22 0.024 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_24 0.018 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_34 0.146 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_60 0.018 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_106 0.033 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_32 0.191 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_66 0.025 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_7 0.026 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_15 0.022 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_163 0.161 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_170 0.028 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_25 0.164 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_127 0.019 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_140 0.051 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_11 0.016 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_39 0.131 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_59 0.017 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_173 0.057 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_175 0.026 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_100 0.021 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_124 0.062 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_210 0.168 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_5 0.051 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_37 0.016 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_40 0.065 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_226 0.019 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_227 0.033 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_4 0.032 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_24 0.02 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_30 0.028 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_64 0.058 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_96 0.028 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_99 0.027 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_108 0.045 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_109 0.062 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_92 0.149 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_1 0.017 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_11 0.058 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_19 0.021 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_20 0.049 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_30 0.058 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_34 0.053 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_37 0.019 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_47 0.019 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_50 0.041 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_54 0.024 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_69 0.022 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_99 0.017 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_108 0.018 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_112 0.037 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_213 0.057 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_222 0.024 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_7 0.135 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_34 0.033 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_3 0.053 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_32 0.019 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_57 0.015 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_26 0.099 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_133 0.022 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_140 0.062 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_78 0.053 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_41 0.034 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_58 0.073 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_90 0.072 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_170 0.022 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_2 0.021 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_4 0.134 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_18 0.029 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_178 0.033 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_13 0.099 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_79 0.125 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_4 0.077 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_39 0.312 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_173 0.034 OrthoFinder output from all 47 species Compare
Sequences (73) (download table)

InterPro Domains

GO Terms

Family Terms