AT1G76900 (AtTLP1, TLP1)

Aliases : AtTLP1, TLP1

Description : tubby like protein 1

Gene families : OG0000251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000251_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G76900
Cluster	HCCA: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00040910	TLP10, AtTLP10,...	RNA biosynthesis.transcriptional activation.TUB...	0.03	OrthoFinder output from all 47 species
Adi_g003799	AtTLP3, TLP3	TUB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02134	AtTLP3, TLP3	TUB-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene26936.t1	AtTLP3, TLP3,...	TUB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g15697	AtTLP3, TLP3	TUB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z003500.1	AtTLP3, TLP3,...	TUB-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cre03.g155450	TLP2, AtTLP2	RNA biosynthesis.transcriptional activation.TUB...	0.02	OrthoFinder output from all 47 species
Dac_g19755	No alias	TUB-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g23631	AtTLP3, TLP3	TUB-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g08281	AtTLP3, TLP3	TUB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09092	AtTLP3, TLP3	TUB-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_06851	AtTLP3, TLP3	transcription factor (TUB)	0.04	OrthoFinder output from all 47 species
Len_g04744	AtTLP3, TLP3	TUB-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
MA_103920g0010	AtTLP3, TLP3	transcription factor (TUB)	0.04	OrthoFinder output from all 47 species
MA_87289g0010	AtTLP3, TLP3	transcription factor (TUB)	0.03	OrthoFinder output from all 47 species
Ppi_g13721	AtTLP3, TLP3	TUB-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0118.g021211	AtTLP3, TLP3	TUB-type transcription factor & original description: CDS=126-977	0.02	OrthoFinder output from all 47 species
Solyc03g033980.4.1	TLP2, AtTLP2,...	transcription factor (TUB)	0.05	OrthoFinder output from all 47 species
Zm00001e001672_P001	AtTLP3, TLP3,...	transcription factor (TUB)	0.02	OrthoFinder output from all 47 species
Zm00001e031774_P001	TLP10, AtTLP10,...	transcription factor (TUB)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008081	phosphoric diester hydrolase activity	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042578	phosphoric ester hydrolase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0001101	response to acid chemical	IEP	HCCA
BP	GO:0001666	response to hypoxia	IEP	HCCA
BP	GO:0006914	autophagy	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0009414	response to water deprivation	IEP	HCCA
BP	GO:0009415	response to water	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009873	ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0034059	response to anoxia	IEP	HCCA
BP	GO:0036293	response to decreased oxygen levels	IEP	HCCA
BP	GO:0036294	cellular response to decreased oxygen levels	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0061919	process utilizing autophagic mechanism	IEP	HCCA
BP	GO:0070482	response to oxygen levels	IEP	HCCA
BP	GO:0070887	cellular response to chemical stimulus	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071369	cellular response to ethylene stimulus	IEP	HCCA
BP	GO:0071453	cellular response to oxygen levels	IEP	HCCA
BP	GO:0071456	cellular response to hypoxia	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	56	104
IPR000007	Tubby_C	120	450

External Links

No external refs found!

AT1G76900 (AtTLP1, TLP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation