AT1G75710

Description : C2H2-like zinc finger protein

Gene families : OG0001550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001550_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G75710

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene16934.t1	Aspi01Gene16934	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g15387	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01024778001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
Gb_25842	No alias	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os01g57650.1	LOC_Os01g57650	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os04g59380.1	LOC_Os04g59380	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os06g46910.1	LOC_Os06g46910	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023140	No alias	not classified & original description: CDS=905-2272	0.03	OrthoFinder output from all 47 species
Solyc04g081370.2.1	Solyc04g081370	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Tin_g17139	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e024498_P001	Zm00001e024498	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005539	glycosaminoglycan binding	IEP	HCCA
MF	GO:0008327	methyl-CpG binding	IEP	HCCA
CC	GO:0010369	chromocenter	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0042834	peptidoglycan binding	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
CC	GO:0046658	obsolete anchored component of plasma membrane	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!