AT1G74600

Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G74600
Cluster	HCCA: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00099p00097640	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g39530...	0.03	OrthoFinder output from all 47 species
AT3G08820	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.01	OrthoFinder output from all 47 species
Adi_g003303	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g005549	CRR2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g005739	MEF19	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g023974	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g034178	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g035612	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g056630	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g060846	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g074694	EMB2261	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g085794	OTP82	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g086463	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g088362	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g111214	EMB2758	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g42379	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g16335	EMB2758	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g17028	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g26382	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g26450	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g35754	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g38174	No alias	ssDNA-binding protein *(OSB) & original description: none	0.01	OrthoFinder output from all 47 species
Als_g05010	CRR22	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Als_g06389	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g27639	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g33642	No alias	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g27914	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g26015	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g28234	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g60598	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene08600.t1	Aspi01Gene08600	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene14586.t2	Aspi01Gene14586	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene36735.t1	Aspi01Gene36735	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000167	No alias	not classified & original description: CDS=1-1701	0.03	OrthoFinder output from all 47 species
Azfi_s0028.g023827	No alias	not classified & original description: CDS=1-3255	0.03	OrthoFinder output from all 47 species
Azfi_s0035.g025537	No alias	ssDNA-binding protein *(OSB) & original description: CDS=167-2242	0.03	OrthoFinder output from all 47 species
Azfi_s0090.g042642	No alias	not classified & original description: CDS=39-695	0.01	OrthoFinder output from all 47 species
Azfi_s0277.g061496	No alias	not classified & original description: CDS=1-2121	0.03	OrthoFinder output from all 47 species
Azfi_s0349.g066473	No alias	not classified & original description: CDS=1-1980	0.02	OrthoFinder output from all 47 species
Azfi_s1334.g101644	No alias	not classified & original description: CDS=1-3543	0.01	OrthoFinder output from all 47 species
Azfi_s4317.g118724	No alias	not classified & original description: CDS=1-465	0.01	OrthoFinder output from all 47 species
Cba_g05935	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g06936	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g19394	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g20834	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g75409	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.01G031300.1	Ceric.01G031300	not classified & original description: pacid=50591599...	0.01	OrthoFinder output from all 47 species
Ceric.01G053600.1	Ceric.01G053600	not classified & original description: pacid=50592089...	0.02	OrthoFinder output from all 47 species
Ceric.07G042200.1	Ceric.07G042200	not classified & original description: pacid=50626031...	0.01	OrthoFinder output from all 47 species
Ceric.07G081900.1	Ceric.07G081900	not classified & original description: pacid=50627936...	0.02	OrthoFinder output from all 47 species
Ceric.09G007000.1	Ceric.09G007000	not classified & original description: pacid=50586983...	0.01	OrthoFinder output from all 47 species
Ceric.12G025700.1	Ceric.12G025700	not classified & original description: pacid=50601618...	0.02	OrthoFinder output from all 47 species
Ceric.17G076500.1	Ceric.17G076500	not classified & original description: pacid=50617139...	0.02	OrthoFinder output from all 47 species
Ceric.1Z254100.1	Ceric.1Z254100	not classified & original description: pacid=50632850...	0.01	OrthoFinder output from all 47 species
Ceric.22G073800.1	Ceric.22G073800	not classified & original description: pacid=50614043...	0.02	OrthoFinder output from all 47 species
Dac_g07481	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g07482	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g43531	OTP84	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g05274	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g07156	OTP84	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g28293	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g46395	EMB2758	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g04453	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g09930	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g10613	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g15725	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Dde_g16461	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g22836	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g22846	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12270	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g18216	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g23273	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01009574001	OSB1	Cell cycle.organelle machineries.DNA...	0.02	OrthoFinder output from all 47 species
GSVIVT01010898001	No alias	Pentatricopeptide repeat-containing protein At2g34400...	0.01	OrthoFinder output from all 47 species
LOC_Os02g01610.1	LOC_Os02g01610	Putative pentatricopeptide repeat-containing protein...	0.02	OrthoFinder output from all 47 species
LOC_Os04g09530.1	LOC_Os04g09530	RNA editing factor (BLX)	0.02	OrthoFinder output from all 47 species
Len_g02911	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g36740	No alias	ssDNA-binding protein *(OSB) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g06223	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g10692	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g17636	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_474261g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.01	OrthoFinder output from all 47 species
Msp_g03763	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Msp_g31719	LOI1, MEF11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g34210	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g34533	VAC1, ECB2, ATECB2	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Nbi_g08599	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g15172	OTP86	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g16442	OTP84	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g04075	OTP84	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g12341	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g23510	CRR22	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g33192	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g34327	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g34702	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g36408	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g26070	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g30084	CRR22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g03245	OTP84	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g18936	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g45358	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g57919	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007831	No alias	not classified & original description: CDS=364-1791	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011560	No alias	not classified & original description: CDS=661-2424	0.02	OrthoFinder output from all 47 species
Sam_g05209	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g13564	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g19039	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19760	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g24891	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26236	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26415	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g27517	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g29135	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g32958	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g48011	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g48925	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo108652	CRR22	Pentatricopeptide repeat-containing protein At1g11290,...	0.02	OrthoFinder output from all 47 species
Smo122934	EMB2758	Pentatricopeptide repeat-containing protein At4g33990...	0.02	OrthoFinder output from all 47 species
Smo76175	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.02	OrthoFinder output from all 47 species
Solyc01g098480.3.1	Solyc01g098480	Pentatricopeptide repeat-containing protein At2g21090...	0.03	OrthoFinder output from all 47 species
Solyc03g115800.1.1	Solyc03g115800	Putative pentatricopeptide repeat-containing protein...	0.01	OrthoFinder output from all 47 species
Spa_g40438	OTP86	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g05654	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g09745	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10691	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10878	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g15029	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g26778	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g35082	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g44069	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e019482_P001	Zm00001e019482	Pentatricopeptide repeat-containing protein At5g48910...	0.02	OrthoFinder output from all 47 species
Zm00001e040920_P001	Zm00001e040920	Pentatricopeptide repeat-containing protein At3g26540...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IMP	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
BP	GO:0006089	lactate metabolic process	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009438	methylglyoxal metabolic process	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	HCCA
BP	GO:0042182	ketone catabolic process	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0045787	positive regulation of cell cycle	IEP	HCCA
BP	GO:0046185	aldehyde catabolic process	IEP	HCCA
BP	GO:0048444	floral organ morphogenesis	IEP	HCCA
BP	GO:0048446	petal morphogenesis	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051596	methylglyoxal catabolic process	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055070	copper ion homeostasis	IEP	HCCA
BP	GO:0055076	transition metal ion homeostasis	IEP	HCCA
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	189	210
IPR002885	Pentatricopeptide_repeat	422	449
IPR002885	Pentatricopeptide_repeat	791	816
IPR002885	Pentatricopeptide_repeat	287	311
IPR002885	Pentatricopeptide_repeat	518	546
IPR002885	Pentatricopeptide_repeat	391	412
IPR002885	Pentatricopeptide_repeat	618	648
IPR002885	Pentatricopeptide_repeat	314	361
IPR002885	Pentatricopeptide_repeat	215	262
IPR002885	Pentatricopeptide_repeat	716	764
IPR002885	Pentatricopeptide_repeat	113	160

External Links

No external refs found!

AT1G74600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation