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  5. AT1G71420

AT1G71420


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0022420 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0022420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G71420
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01037205001 No alias Pentatricopeptide repeat-containing protein At1g71420... 0.01 OrthoFinder output from all 47 species
Solyc02g062630.1.1 Solyc02g062630 Pentatricopeptide repeat-containing protein At1g71420... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0007143 female meiotic nuclear division IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 605 735
IPR002885 Pentatricopeptide_repeat 334 380
IPR002885 Pentatricopeptide_repeat 506 530
IPR002885 Pentatricopeptide_repeat 469 496
IPR002885 Pentatricopeptide_repeat 408 434
IPR002885 Pentatricopeptide_repeat 227 257
IPR002885 Pentatricopeptide_repeat 436 461
IPR002885 Pentatricopeptide_repeat 125 171
No external refs found!