AT1G69940 (ATPPME1, PPME1)

Aliases : ATPPME1, PPME1

Description : Pectin lyase-like superfamily protein

Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G69940

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00085870	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
AMTR_s00007p00264370	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
AT5G07430	No alias	Pectin lyase-like superfamily protein	0.07	OrthoFinder output from all 47 species
AT5G61680	No alias	Pectin lyase-like superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g011343	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g046688	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g17897	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g38864	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g16581	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g24708	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g12102	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g47438	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g56348	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01241	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g10592	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11491	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g26785	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene16818.t1	Aspi01Gene16818	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene67011.t1	Aspi01Gene67011	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0004.g008437	No alias	pectin methylesterase & original description: CDS=79-1257	0.03	OrthoFinder output from all 47 species
Azfi_s0033.g024992	No alias	pectin methylesterase & original description: CDS=226-1431	0.04	OrthoFinder output from all 47 species
Azfi_s0055.g033955	No alias	pectin methylesterase & original description: CDS=387-1493	0.06	OrthoFinder output from all 47 species
Azfi_s1046.g096024	No alias	not classified & original description: CDS=62-952	0.03	OrthoFinder output from all 47 species
Cba_g03729	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g05738	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g34624	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.1Z171200.1	Ceric.1Z171200	pectin methylesterase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.1Z228300.1	Ceric.1Z228300	pectin methylesterase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.29G054600.1	Ceric.29G054600	pectin methylesterase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.36G035900.1	Ceric.36G035900	pectin methylesterase & original description:...	0.02	OrthoFinder output from all 47 species
Dac_g00830	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g07534	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g11068	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g17627	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g28954	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g42904	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g51244	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g51672	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g20873	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01031250001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
Gb_23209	No alias	pectin methylesterase	0.04	OrthoFinder output from all 47 species
Len_g04249	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Len_g07516	No alias	pectin methylesterase & original description: none	0.04	OrthoFinder output from all 47 species
Len_g12523	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g15828	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
MA_99816g0010	No alias	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Msp_g39582	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g40955	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g42451	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g03614	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c16_6660V3.1	Pp3c16_6660	Pectin lyase-like superfamily protein	0.01	OrthoFinder output from all 47 species
Ppi_g24799	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g25901	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g29894	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g31507	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g63851	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005949	No alias	pectin methylesterase & original description: CDS=175-1425	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016132	No alias	pectin methylesterase & original description: CDS=1-684	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025813	No alias	pectin methylesterase & original description: CDS=1-1236	0.04	OrthoFinder output from all 47 species
Sam_g25180	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Solyc05g052110.3.1	Solyc05g052110	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Spa_g00755	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g29378	No alias	pectin methylesterase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g49901	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g49902	No alias	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e002891_P001	Zm00001e002891	pectin methylesterase	0.06	OrthoFinder output from all 47 species
Zm00001e029074_P001	Zm00001e029074	pectin methylesterase	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005783	endoplasmic reticulum	NAS	Interproscan
CC	GO:0005794	Golgi apparatus	NAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009505	plant-type cell wall	IDA	Interproscan
CC	GO:0009505	plant-type cell wall	ISS	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009860	pollen tube growth	IDA	Interproscan
BP	GO:0009860	pollen tube growth	IMP	Interproscan
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016049	cell growth	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	IMP	Interproscan
MF	GO:0030599	pectinesterase activity	ISS	Interproscan
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042742	defense response to bacterium	None	Extended
CC	GO:0042995	cell projection	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0050829	defense response to Gram-negative bacterium	IMP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
CC	GO:0090406	pollen tube	IDA	Interproscan
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004470	malic enzyme activity	IEP	HCCA
MF	GO:0004473	malate dehydrogenase (decarboxylating) (NADP+) activity	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0004623	phospholipase A2 activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005451	obsolete monoatomic cation:proton antiporter activity	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006108	malate metabolic process	IEP	HCCA
BP	GO:0006814	sodium ion transport	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009306	protein secretion	IEP	HCCA
BP	GO:0009566	fertilization	IEP	HCCA
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009827	plant-type cell wall modification	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0010351	lithium ion transport	IEP	HCCA
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0015385	sodium:proton antiporter activity	IEP	HCCA
MF	GO:0016004	phospholipase activator activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016615	malate dehydrogenase activity	IEP	HCCA
MF	GO:0016652	oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0030133	transport vesicle	IEP	HCCA
CC	GO:0030427	site of polarized growth	IEP	HCCA
MF	GO:0030551	cyclic nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0035725	sodium ion transmembrane transport	IEP	HCCA
CC	GO:0035838	growing cell tip	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
CC	GO:0045177	apical part of cell	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
MF	GO:0051139	metal cation:proton antiporter activity	IEP	HCCA
BP	GO:0051259	protein complex oligomerization	IEP	HCCA
BP	GO:0051260	protein homooligomerization	IEP	HCCA
CC	GO:0051286	cell tip	IEP	HCCA
CC	GO:0060187	cell pole	IEP	HCCA
MF	GO:0060229	lipase activator activity	IEP	HCCA
CC	GO:0070382	exocytic vesicle	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071692	protein localization to extracellular region	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0080092	regulation of pollen tube growth	IEP	HCCA
CC	GO:0090404	pollen tube tip	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0099503	secretory vesicle	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140828	metal cation:monoatomic cation antiporter activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	73	351

External Links

No external refs found!

AT1G69940 (ATPPME1, PPME1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation