AT1G68810

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0001169 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001169_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G68810
Cluster	HCCA: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00019320	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
AT2G40200	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g033761	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g03176	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g09866	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g18451	No alias	bHLH-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g36805	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene06352.t1	Aspi01Gene06352	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0002.g001194	No alias	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Cba_g29521	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01011960001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.07	OrthoFinder output from all 47 species
GSVIVT01020688001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01025747001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
LOC_Os01g11910.1	LOC_Os01g11910	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os03g15440.1	LOC_Os03g15440	transcription factor (bHLH)	0.07	OrthoFinder output from all 47 species
LOC_Os05g07120.1	LOC_Os05g07120	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os08g33590.1	LOC_Os08g33590	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
LOC_Os08g37290.1	BHLH32, ATAIG1,...	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
MA_10157g0010	No alias	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
MA_65818g0010	No alias	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Ore_g17089	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g21895	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g23621	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g24888	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g51509	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo412681	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.02	OrthoFinder output from all 47 species
Solyc02g076920.3.1	Solyc02g076920	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Solyc04g006990.3.1	Solyc04g006990	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Solyc04g014360.3.1	Solyc04g014360	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Solyc04g076240.3.1	Solyc04g076240	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc05g009880.3.1	Solyc05g009880	transcription factor (bHLH)	0.08	OrthoFinder output from all 47 species
Solyc06g051260.4.1	Solyc06g051260	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc10g078380.2.1	Solyc10g078380	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Zm00001e001119_P001	Zm00001e001119	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Zm00001e006132_P001	Zm00001e006132	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e009812_P001	Zm00001e009812	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e009972_P001	Zm00001e009972	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e016455_P001	BHLH32, ATAIG1,...	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Zm00001e022445_P001	Zm00001e022445	transcription factor (bHLH)	0.09	OrthoFinder output from all 47 species
Zm00001e034395_P001	Zm00001e034395	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e038535_P001	Zm00001e038535	transcription factor (bHLH)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
CC	GO:0000325	plant-type vacuole	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
MF	GO:0008131	primary amine oxidase activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010065	primary meristem tissue development	IEP	HCCA
BP	GO:0010067	procambium histogenesis	IEP	HCCA
BP	GO:0010072	primary shoot apical meristem specification	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	HCCA
BP	GO:0010410	hemicellulose metabolic process	IEP	HCCA
BP	GO:0010413	glucuronoxylan metabolic process	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
BP	GO:0010623	programmed cell death involved in cell development	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
CC	GO:0045298	tubulin complex	IEP	HCCA
BP	GO:0045491	xylan metabolic process	IEP	HCCA
BP	GO:0045492	xylan biosynthetic process	IEP	HCCA
BP	GO:0045597	positive regulation of cell differentiation	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048508	embryonic meristem development	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	HCCA
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	HCCA
BP	GO:2000652	regulation of secondary cell wall biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	176	223

External Links

No external refs found!

AT1G68810

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation