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  5. AT1G67680

AT1G67680


Description : SRP72 RNA-binding domain


Gene families : OG0006069 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006069_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G67680

Target Alias Description ECC score Gene Family Method Actions
Aob_g18346 No alias component *(SRP72) of SRP (signal recognition particle)... 0.04 OrthoFinder output from all 47 species
Ceric.1Z034700.1 Ceric.1Z034700 component *(SRP72) of SRP (signal recognition particle)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.181 No alias Protein translocation.endoplasmic... 0.03 OrthoFinder output from all 47 species
Cre03.g182500 No alias Protein translocation.endoplasmic... 0.01 OrthoFinder output from all 47 species
Dcu_g14693 No alias component *(SRP72) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
GSVIVT01010320001 No alias Protein translocation.endoplasmic... 0.03 OrthoFinder output from all 47 species
LOC_Os01g66560.1 LOC_Os01g66560 component SRP72 of SRP (signal recognition particle) complex 0.03 OrthoFinder output from all 47 species
Lfl_g11159 No alias component *(SRP72) of SRP (signal recognition particle)... 0.07 OrthoFinder output from all 47 species
Mp3g01460.1 No alias component SRP72 of SRP (signal recognition particle) complex 0.05 OrthoFinder output from all 47 species
Nbi_g03709 No alias component *(SRP72) of SRP (signal recognition particle)... 0.02 OrthoFinder output from all 47 species
Ore_g09232 No alias component *(SRP72) of SRP (signal recognition particle)... 0.05 OrthoFinder output from all 47 species
Pir_g05599 No alias component *(SRP72) of SRP (signal recognition particle)... 0.05 OrthoFinder output from all 47 species
Smo166386 No alias Protein translocation.endoplasmic... 0.02 OrthoFinder output from all 47 species
Zm00001e019008_P003 Zm00001e019008 component SRP72 of SRP (signal recognition particle) complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000338 protein deneddylation IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
CC GO:0000502 proteasome complex IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0004839 ubiquitin activating enzyme activity IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005797 Golgi medial cisterna IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006109 regulation of carbohydrate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006424 glutamyl-tRNA aminoacylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006498 N-terminal protein lipidation IEP HCCA
BP GO:0006499 N-terminal protein myristoylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006722 triterpenoid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0008180 COP9 signalosome IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008398 sterol 14-demethylase activity IEP HCCA
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
CC GO:0009505 plant-type cell wall IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
BP GO:0009791 post-embryonic development IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009896 positive regulation of catabolic process IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
BP GO:0010100 negative regulation of photomorphogenesis IEP HCCA
BP GO:0010387 COP9 signalosome assembly IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010565 regulation of cellular ketone metabolic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016104 triterpenoid biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0018377 protein myristoylation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019742 pentacyclic triterpenoid metabolic process IEP HCCA
BP GO:0019745 pentacyclic triterpenoid biosynthetic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0030656 regulation of vitamin metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
CC GO:0031985 Golgi cisterna IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0032451 demethylase activity IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0043255 regulation of carbohydrate biosynthetic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0045732 positive regulation of protein catabolic process IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0062012 regulation of small molecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080119 ER body organization IEP HCCA
BP GO:0090068 positive regulation of cell cycle process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901989 positive regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1901992 positive regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000030 regulation of response to red or far red light IEP HCCA
BP GO:2000082 regulation of L-ascorbic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013699 Signal_recog_part_SRP72_RNA-bd 558 609
IPR031545 SRP_TPR-like 35 165
No external refs found!