AT1G65440 (GTB1)

Aliases : GTB1

Description : global transcription factor group B1

Gene families : OG0001807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G65440

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00038p00136890	GTB1,...	Chromatin organisation.histone chaperone...	0.08	OrthoFinder output from all 47 species
Adi_g055496	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.05	OrthoFinder output from all 47 species
Adi_g060511	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.03	OrthoFinder output from all 47 species
Aev_g43821	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.08	OrthoFinder output from all 47 species
Ala_g25347	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.1	OrthoFinder output from all 47 species
Ala_g37718	No alias	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.07	OrthoFinder output from all 47 species
Als_g61446	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.04	OrthoFinder output from all 47 species
Aob_g17694	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.09	OrthoFinder output from all 47 species
Aob_g20381	No alias	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.06	OrthoFinder output from all 47 species
Aop_g31491	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.07	OrthoFinder output from all 47 species
Azfi_s0254.g060416	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.04	OrthoFinder output from all 47 species
Ceric.21G005900.1	GTB1, Ceric.21G005900	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.07	OrthoFinder output from all 47 species
Ceric.30G057400.1	Ceric.30G057400	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001486.8	GTB1	Chromatin organisation.histone chaperone...	0.04	OrthoFinder output from all 47 species
Cre09.g403182	GTB1	Chromatin organisation.histone chaperone...	0.07	OrthoFinder output from all 47 species
Dac_g22241	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.04	OrthoFinder output from all 47 species
Dcu_g14255	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.12	OrthoFinder output from all 47 species
Dcu_g19973	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.03	OrthoFinder output from all 47 species
GSVIVT01025815001	GTB1	Chromatin organisation.histone chaperone...	0.09	OrthoFinder output from all 47 species
Gb_29261	GTB1	histone chaperone (SPT6). component SPT6 of SPT6-IWS1...	0.06	OrthoFinder output from all 47 species
LOC_Os05g41510.1	GTB1, LOC_Os05g41510	histone chaperone (SPT6). component SPT6 of SPT6-IWS1...	0.06	OrthoFinder output from all 47 species
Len_g19196	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.05	OrthoFinder output from all 47 species
Lfl_g05758	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.07	OrthoFinder output from all 47 species
MA_13648g0020	GTB1	histone chaperone (SPT6). component SPT6 of SPT6-IWS1...	0.08	OrthoFinder output from all 47 species
Mp2g25720.1	GTB1	histone chaperone (SPT6). component SPT6 of SPT6-IWS1...	0.1	OrthoFinder output from all 47 species
Msp_g42177	No alias	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.03	OrthoFinder output from all 47 species
Msp_g43712	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.07	OrthoFinder output from all 47 species
Nbi_g05486	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.06	OrthoFinder output from all 47 species
Ore_g08934	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.07	OrthoFinder output from all 47 species
Ore_g38590	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g13993	No alias	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.05	OrthoFinder output from all 47 species
Smo164675	GTB1	Chromatin organisation.histone chaperone...	0.07	OrthoFinder output from all 47 species
Solyc10g081020.2.1	GTB1, Solyc10g081020	histone chaperone (SPT6). component SPT6 of SPT6-IWS1...	0.09	OrthoFinder output from all 47 species
Spa_g16432	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.03	OrthoFinder output from all 47 species
Tin_g02913	GTB1	component *(SPT6) of SPT6-IWS1 transcription elongation...	0.09	OrthoFinder output from all 47 species
Zm00001e032018_P003	GTB1, Zm00001e032018	histone chaperone (SPT6). component SPT6 of SPT6-IWS1...	0.18	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002100	tRNA wobble adenosine to inosine editing	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004000	adenosine deaminase activity	IEP	HCCA
MF	GO:0004084	branched-chain-amino-acid transaminase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005652	nuclear lamina	IEP	HCCA
CC	GO:0005665	RNA polymerase II, core complex	IEP	HCCA
CC	GO:0005769	early endosome	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006382	adenosine to inosine editing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008251	tRNA-specific adenosine deaminase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016553	base conversion or substitution editing	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0019239	deaminase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0032504	multicellular organism reproduction	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
CC	GO:0034399	nuclear periphery	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0043621	protein self-association	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1901420	negative regulation of response to alcohol	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028231	Spt6_YqgF	715	871
IPR032706	Spt6_HHH	875	975
IPR035420	Spt6_SH2	1192	1409
IPR028083	Spt6_acidic_N_dom	33	118

External Links

No external refs found!

AT1G65440 (GTB1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation