AT1G63680 (MURE, PDE316, ATMURE)

Aliases : MURE, PDE316, ATMURE

Description : acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases

Gene families : OG0004194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004194_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G63680

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00236210	MURE, PDE316,...	RNA biosynthesis.organelle machineries.RNA polymerase...	0.14	OrthoFinder output from all 47 species
Adi_g008965	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Als_g09620	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.04	OrthoFinder output from all 47 species
Aob_g32256	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Aop_g11920	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Azfi_s0008.g011499	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.06	OrthoFinder output from all 47 species
Cba_g03909	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.05	OrthoFinder output from all 47 species
Cba_g69159	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.37G004600.1	MURE, PDE316,...	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.12	OrthoFinder output from all 47 species
Cre12.g519900	MURE, PDE316, ATMURE	RNA biosynthesis.organelle machineries.RNA polymerase...	0.03	OrthoFinder output from all 47 species
Dde_g05922	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
GSVIVT01019746001	MURE, PDE316, ATMURE	RNA biosynthesis.organelle machineries.RNA polymerase...	0.21	OrthoFinder output from all 47 species
Len_g12297	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.06	OrthoFinder output from all 47 species
MA_961480g0010	MURE, PDE316, ATMURE	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.07	OrthoFinder output from all 47 species
Mp6g20740.1	MURE, PDE316, ATMURE	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.15	OrthoFinder output from all 47 species
Nbi_g12757	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Ore_g33830	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.03	OrthoFinder output from all 47 species
Pir_g64894	MURE, PDE316, ATMURE	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Pp3c24_18820V3.1	MURE, PDE316,...	acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases	0.02	OrthoFinder output from all 47 species
Sam_g51453	No alias	cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)...	0.02	OrthoFinder output from all 47 species
Smo148635	MURE, PDE316, ATMURE	RNA biosynthesis.organelle machineries.RNA polymerase...	0.02	OrthoFinder output from all 47 species
Solyc08g081170.4.1	MURE, PDE316,...	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.16	OrthoFinder output from all 47 species
Zm00001e037912_P001	MURE, PDE316,...	PAP11/MURE cofactor of plastid-encoded RNA polymerase	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	ISS	Interproscan
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009295	nucleoid	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IMP	Interproscan
BP	GO:0009658	chloroplast organization	RCA	Interproscan
BP	GO:0009668	plastid membrane organization	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009902	chloroplast relocation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010020	chloroplast fission	IMP	Interproscan
BP	GO:0010027	thylakoid membrane organization	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	ISS	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019750	chloroplast localization	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	RCA	Interproscan
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042793	plastid transcription	RCA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043572	plastid fission	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048285	organelle fission	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051644	plastid localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051656	establishment of organelle localization	None	Extended
BP	GO:0051667	establishment of plastid localization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
BP	GO:0008356	asymmetric cell division	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
CC	GO:0009508	plastid chromosome	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
CC	GO:0009528	plastid inner membrane	IEP	HCCA
CC	GO:0009706	chloroplast inner membrane	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
CC	GO:0010006	Toc complex	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
BP	GO:0016556	mRNA modification	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
CC	GO:0031359	obsolete integral component of chloroplast outer membrane	IEP	HCCA
CC	GO:0031897	Tic complex	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0045037	protein import into chloroplast stroma	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048316	seed development	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048598	embryonic morphogenesis	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
MF	GO:0070180	large ribosomal subunit rRNA binding	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
BP	GO:0080158	obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:1901259	chloroplast rRNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000713	Mur_ligase_N	264	337
IPR004101	Mur_ligase_C	577	660
IPR013221	Mur_ligase_cen	349	556

External Links

No external refs found!

AT1G63680 (MURE, PDE316, ATMURE)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation