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  5. AT1G63630

AT1G63630


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G63630
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT1G63230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G63320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g18948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g49981 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g34345 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01036253001 No alias Pentatricopeptide repeat-containing protein At1g12620... 0.01 OrthoFinder output from all 47 species
Len_g39172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g25858 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_6283623g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_7256709g0010 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.01 OrthoFinder output from all 47 species
Msp_g04828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30153 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo103638 No alias Pentatricopeptide repeat-containing protein At3g22470,... 0.03 OrthoFinder output from all 47 species
Smo94312 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.03 OrthoFinder output from all 47 species
Smo99426 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 14 41
IPR002885 Pentatricopeptide_repeat 184 232
IPR002885 Pentatricopeptide_repeat 113 162
IPR002885 Pentatricopeptide_repeat 43 92
No external refs found!