AT1G61660

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000725 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000725_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G61660

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00109p00114170	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
AMTR_s00167p00019840	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
AT2G20100	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
Aev_g06761	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g30685	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14362	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g21207	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g05285	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g06030	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene71895.t1	Aspi01Gene71895	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g33477	No alias	bHLH-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.32G034500.1	Ceric.32G034500	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g14027	No alias	bHLH-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g25638	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g14173	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01005301001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
GSVIVT01014542001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01016594001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.05	OrthoFinder output from all 47 species
GSVIVT01017050001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
GSVIVT01038142001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Gb_40387	No alias	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
LOC_Os02g17680.1	LOC_Os02g17680	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os04g41570.2	LOC_Os04g41570	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os07g28890.1	LOC_Os07g28890	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Len_g36610	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g10359	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g19970.1	No alias	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Msp_g15621	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g09411	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g13014	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g05050	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16505	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g18175	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g37009	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g079760.3.1	Solyc02g079760	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc04g080710.4.1	Solyc04g080710	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Solyc07g020960.3.1	Solyc07g020960	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc10g006640.3.1	Solyc10g006640	transcription factor (bHLH)	0.1	OrthoFinder output from all 47 species
Zm00001e007719_P001	Zm00001e007719	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Zm00001e010350_P001	Zm00001e010350	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Zm00001e016395_P001	Zm00001e016395	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Zm00001e032055_P001	Zm00001e032055	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e034854_P002	Zm00001e034854	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Zm00001e041137_P002	Zm00001e041137	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	HCCA
BP	GO:0001763	morphogenesis of a branching structure	IEP	HCCA
BP	GO:0003008	system process	IEP	HCCA
BP	GO:0003013	circulatory system process	IEP	HCCA
BP	GO:0003018	vascular process in circulatory system	IEP	HCCA
BP	GO:0003333	amino acid transmembrane transport	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:monoatomic cation symporter activity	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006568	tryptophan metabolic process	IEP	HCCA
BP	GO:0006569	tryptophan catabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006586	indolalkylamine metabolic process	IEP	HCCA
BP	GO:0006835	dicarboxylic acid transport	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	HCCA
BP	GO:0009414	response to water deprivation	IEP	HCCA
BP	GO:0009415	response to water	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009683	indoleacetic acid metabolic process	IEP	HCCA
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009804	coumarin metabolic process	IEP	HCCA
BP	GO:0009805	coumarin biosynthetic process	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0009851	auxin biosynthetic process	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009934	regulation of meristem structural organization	IEP	HCCA
BP	GO:0010223	secondary shoot formation	IEP	HCCA
BP	GO:0010232	vascular transport	IEP	HCCA
BP	GO:0010233	phloem transport	IEP	HCCA
BP	GO:0010346	shoot axis formation	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015172	acidic amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015175	neutral L-amino acid transmembrane transporter activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015711	organic anion transport	IEP	HCCA
BP	GO:0015740	C4-dicarboxylate transport	IEP	HCCA
BP	GO:0015801	aromatic amino acid transport	IEP	HCCA
BP	GO:0015810	aspartate transmembrane transport	IEP	HCCA
BP	GO:0015827	tryptophan transport	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016108	tetraterpenoid metabolic process	IEP	HCCA
BP	GO:0016109	tetraterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016116	carotenoid metabolic process	IEP	HCCA
BP	GO:0016117	carotenoid biosynthetic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042436	indole-containing compound catabolic process	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0046942	carboxylic acid transport	IEP	HCCA
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0072348	sulfur compound transport	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
MF	GO:0090448	glucosinolate:proton symporter activity	IEP	HCCA
BP	GO:0090449	phloem glucosinolate loading	IEP	HCCA
BP	GO:0110126	phloem loading	IEP	HCCA
BP	GO:1901349	glucosinolate transport	IEP	HCCA
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	HCCA
BP	GO:1903825	organic acid transmembrane transport	IEP	HCCA
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G61660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation