AT1G60960 (IRT3, ATIRT3)

Aliases : IRT3, ATIRT3

Description : iron regulated transporter 3

Gene families : OG0000472 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000472_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G60960

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00045670	ATZIP6, ZIP6,...	Solute transport.carrier-mediated transport.ZIP...	0.04	OrthoFinder output from all 47 species
AMTR_s00032p00184330	ZIP7,...	Solute transport.carrier-mediated transport.ZIP...	0.02	OrthoFinder output from all 47 species
AMTR_s00062p00183460	ZIP1,...	Solute transport.carrier-mediated transport.ZIP...	0.05	OrthoFinder output from all 47 species
AT4G19690	ATIRT1, IRT1	iron-regulated transporter 1	0.05	OrthoFinder output from all 47 species
AT4G33020	ATZIP9, ZIP9	ZIP metal ion transporter family	0.01	OrthoFinder output from all 47 species
Adi_g058627	ATZIP4, ZIP4	metal cation transporter *(ZIP) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene27419.t1	ATZIP4, ZIP4,...	metal cation transporter *(ZIP) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene48953.t1	ATZIP4, ZIP4,...	metal cation transporter *(ZIP) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene48954.t1	ATZIP4, ZIP4,...	metal cation transporter *(ZIP) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0694.g082561	ATZIP4, ZIP4	metal cation transporter *(ZIP) & original description:...	0.03	OrthoFinder output from all 47 species
Azfi_s0974.g094129	ATZIP4, ZIP4	metal cation transporter *(ZIP) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.02G073300.1	ATZIP4, ZIP4,...	metal cation transporter *(ZIP) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.14G032100.1	ATZIP4, ZIP4,...	metal cation transporter *(ZIP) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.15G030000.1	ATZIP4, ZIP4,...	metal cation transporter *(ZIP) & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g13090	ATZIP4, ZIP4	metal cation transporter *(ZIP) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g00948	ZIP10	metal cation transporter *(ZIP) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g03468	ATZIP4, ZIP4	metal cation transporter *(ZIP) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01014337001	ATIRT1, IRT1	Solute transport.carrier-mediated transport.ZIP...	0.02	OrthoFinder output from all 47 species
GSVIVT01032785001	ATZIP6, ZIP6	Solute transport.carrier-mediated transport.ZIP...	0.07	OrthoFinder output from all 47 species
Gb_00356	ATZIP6, ZIP6	metal cation transporter (ZIP)	0.04	OrthoFinder output from all 47 species
Gb_39061	ATZIP4, ZIP4	metal cation transporter (ZIP)	0.03	OrthoFinder output from all 47 species
Gb_39062	ATZIP4, ZIP4	metal cation transporter (ZIP)	0.04	OrthoFinder output from all 47 species
LOC_Os07g12890.1	ZIP1, LOC_Os07g12890	metal cation transporter (ZIP)	0.04	OrthoFinder output from all 47 species
Len_g45330	ATZIP4, ZIP4	metal cation transporter *(ZIP) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g17667	ATZIP4, ZIP4	metal cation transporter *(ZIP) & original description: none	0.03	OrthoFinder output from all 47 species
MA_31095g0010	ATZIP4, ZIP4	metal cation transporter (ZIP)	0.03	OrthoFinder output from all 47 species
MA_6126514g0010	ZIP1	metal cation transporter (ZIP)	0.03	OrthoFinder output from all 47 species
MA_842474g0010	ZIP5	metal cation transporter (ZIP)	0.02	OrthoFinder output from all 47 species
Nbi_g18185	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Pir_g10690	ATZIP4, ZIP4	metal cation transporter *(ZIP) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g29455	ATZIP4, ZIP4	metal cation transporter *(ZIP) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g17347	ZIP7	metal cation transporter *(ZIP) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g17001	No alias	metal cation transporter *(ZIP) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g069190.4.1	ZIP10, Solyc02g069190	metal cation transporter (ZIP)	0.05	OrthoFinder output from all 47 species
Solyc02g069200.3.1	ATIRT1, IRT1,...	metal cation transporter (ZIP)	0.05	OrthoFinder output from all 47 species
Solyc02g069210.3.1	ZIP10, Solyc02g069210	metal cation transporter (ZIP)	0.03	OrthoFinder output from all 47 species
Solyc07g043230.3.1	ZIP3, Solyc07g043230	metal cation transporter (ZIP)	0.04	OrthoFinder output from all 47 species
Spa_g03784	IRT3, ATIRT3	metal cation transporter *(ZIP) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006961_P001	ZIP1, Zm00001e006961	metal cation transporter (ZIP)	0.01	OrthoFinder output from all 47 species
Zm00001e031284_P002	ATZIP4, ZIP4,...	metal cation transporter (ZIP)	0.02	OrthoFinder output from all 47 species
Zm00001e033157_P001	ZIP5, Zm00001e033157	metal cation transporter (ZIP)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005381	iron ion transmembrane transporter activity	IMP	Interproscan
MF	GO:0005385	zinc ion transmembrane transporter activity	IMP	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	ISS	Interproscan
BP	GO:0006826	iron ion transport	IMP	Interproscan
BP	GO:0006826	iron ion transport	RCA	Interproscan
BP	GO:0006829	zinc ion transport	IMP	Interproscan
BP	GO:0006833	water transport	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	monoatomic cation transmembrane transporter activity	ISS	Interproscan
BP	GO:0009267	cellular response to starvation	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009624	response to nematode	IEP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010106	cellular response to iron ion starvation	RCA	Interproscan
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	ISS	Interproscan
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
BP	GO:0030001	metal ion transport	ISS	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0042044	fluid transport	None	Extended
BP	GO:0042594	response to starvation	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
MF	GO:0046873	metal ion transmembrane transporter activity	ISS	Interproscan
MF	GO:0046915	transition metal ion transmembrane transporter activity	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005217	intracellular ligand-gated monoatomic ion channel activity	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
BP	GO:0006874	cellular calcium ion homeostasis	IEP	HCCA
BP	GO:0006875	cellular metal ion homeostasis	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055074	calcium ion homeostasis	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003689	ZIP	61	422

External Links

No external refs found!

AT1G60960 (IRT3, ATIRT3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation