AT1G58370 (ATXYN1, RXF12)

Aliases : ATXYN1, RXF12

Description : glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein

Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G58370
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00041p00160040	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00086p00056140	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AT2G14690	No alias	Glycosyl hydrolase superfamily protein	0.07	OrthoFinder output from all 47 species
AT4G38650	No alias	Glycosyl hydrolase family 10 protein	0.03	OrthoFinder output from all 47 species
Adi_g007681	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g25978	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g10327	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene04570.t1	Aspi01Gene04570	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.30G035800.1	Ceric.30G035800	not classified & original description: pacid=50607993...	0.04	OrthoFinder output from all 47 species
Ceric.30G036100.1	Ceric.30G036100	not classified & original description: pacid=50608372...	0.07	OrthoFinder output from all 47 species
Dcu_g11065	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g13207	ATXYN1, RXF12	endo-beta-1,4-xylanase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g37891	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g26905	ATXYN1, RXF12	endo-beta-1,4-xylanase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01024049001	No alias	No description available	0.04	OrthoFinder output from all 47 species
GSVIVT01037825001	No alias	No description available	0.04	OrthoFinder output from all 47 species
GSVIVT01037833001	No alias	No description available	0.03	OrthoFinder output from all 47 species
Gb_02219	No alias	no description available(sp\|q84wt5\|xyn5l_arath : 355.0)	0.03	OrthoFinder output from all 47 species
Gb_13086	ATXYN1, RXF12	endo-beta-1,4-xylanase	0.06	OrthoFinder output from all 47 species
LOC_Os01g04290.1	LOC_Os01g04290	endo-beta-1,4-xylanase	0.05	OrthoFinder output from all 47 species
LOC_Os01g04300.1	ATXYN1, RXF12,...	endo-beta-1,4-xylanase	0.11	OrthoFinder output from all 47 species
LOC_Os03g10478.1	LOC_Os03g10478	no description available(sp\|q84wt5\|xyn5l_arath : 394.0)	0.03	OrthoFinder output from all 47 species
LOC_Os03g47010.1	ATXYN1, RXF12,...	endo-beta-1,4-xylanase	0.07	OrthoFinder output from all 47 species
LOC_Os05g23924.1	LOC_Os05g23924	no description available(sp\|q84wt5\|xyn5l_arath : 299.0)	0.03	OrthoFinder output from all 47 species
LOC_Os05g25560.1	LOC_Os05g25560	endo-beta-1,4-xylanase	0.03	OrthoFinder output from all 47 species
LOC_Os07g27320.1	LOC_Os07g27320	endo-beta-1,4-xylanase	0.01	OrthoFinder output from all 47 species
LOC_Os10g21100.1	LOC_Os10g21100	no description available(sp\|a0a1p8b8f8\|xyn5_arath : 358.0)	0.03	OrthoFinder output from all 47 species
LOC_Os10g21110.1	LOC_Os10g21110	no description available(sp\|q680b7\|xyn4_arath : 358.0)	0.02	OrthoFinder output from all 47 species
Len_g07345	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g31883	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10632	ATXYN1, RXF12	endo-beta-1,4-xylanase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g27615	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006025	No alias	not classified & original description: CDS=1-2073	0.03	OrthoFinder output from all 47 species
Sam_g09327	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Solyc04g077190.4.1	ATXYN1, RXF12,...	endo-beta-1,4-xylanase	0.03	OrthoFinder output from all 47 species
Tin_g01223	ATXYN1, RXF12	endo-beta-1,4-xylanase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g27477	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000757_P001	Zm00001e000757	no description available(sp\|q84wt5\|xyn5l_arath : 397.0)	0.04	OrthoFinder output from all 47 species
Zm00001e012296_P001	ATXYN1, RXF12,...	endo-beta-1,4-xylanase	0.04	OrthoFinder output from all 47 species
Zm00001e016992_P001	ATXYN1, RXF12,...	endo-beta-1,4-xylanase	0.13	OrthoFinder output from all 47 species
Zm00001e038772_P001	Zm00001e038772	no description available(sp\|q84wt5\|xyn5l_arath : 392.0)	0.03	OrthoFinder output from all 47 species
Zm00001e038773_P006	Zm00001e038773	no description available(sp\|q84wt5\|xyn5l_arath : 388.0)	0.05	OrthoFinder output from all 47 species
Zm00001e040632_P001	Zm00001e040632	no description available(sp\|q680b7\|xyn4_arath : 318.0)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005618	cell wall	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0031176	endo-1,4-beta-xylanase activity	IDA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097599	xylanase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
BP	GO:0009310	amine catabolic process	IEP	HCCA
BP	GO:0009804	coumarin metabolic process	IEP	HCCA
BP	GO:0009805	coumarin biosynthetic process	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	HCCA
MF	GO:0016405	CoA-ligase activity	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0016878	acid-thiol ligase activity	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:2000652	regulation of secondary cell wall biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003305	CenC_carb-bd	29	169
IPR003305	CenC_carb-bd	369	513
IPR003305	CenC_carb-bd	199	334
IPR001000	GH10_dom	570	827

External Links

No external refs found!

AT1G58370 (ATXYN1, RXF12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation