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  5. AT1G53800

AT1G53800


Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins in 242 species: Archae - 2; Bacteria - 216; Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other Eukaryotes - 493 (source: NCBI BLink).


Gene families : OG0001730 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G53800

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00138820 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00147p00104660 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
Adi_g103238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010108 No alias not classified & original description: CDS=68-1096 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035636 No alias not classified & original description: CDS=28-522 0.04 OrthoFinder output from all 47 species
Azfi_s0066.g036090 No alias not classified & original description: CDS=173-1813 0.03 OrthoFinder output from all 47 species
Azfi_s0345.g065792 No alias not classified & original description: CDS=123-1853 0.08 OrthoFinder output from all 47 species
Cba_g09085 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g60241 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Cba_g71907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G079500.1 Ceric.21G079500 not classified & original description: pacid=50604458... 0.07 OrthoFinder output from all 47 species
Ceric.24G059100.1 Ceric.24G059100 not classified & original description: pacid=50628706... 0.04 OrthoFinder output from all 47 species
Dcu_g01671 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g01308 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014224001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01016660001 No alias No description available 0.07 OrthoFinder output from all 47 species
Gb_18962 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os10g12354.1 LOC_Os10g12354 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Len_g14879 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g19929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39368 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
MA_643462g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp6g14930.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g11885 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g24462 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g42536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g48486 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09329 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012057 No alias not classified & original description: CDS=33-1778 0.03 OrthoFinder output from all 47 species
Sam_g27722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo439642 No alias No description available 0.04 OrthoFinder output from all 47 species
Solyc03g123700.4.1 Solyc03g123700 no hits & (original description: none) 0.16 OrthoFinder output from all 47 species
Solyc12g014220.3.1 Solyc12g014220 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Tin_g13657 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g28999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006550_P001 Zm00001e006550 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e032593_P001 Zm00001e032593 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000372 Group I intron splicing IEP HCCA
BP GO:0000373 Group II intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010020 chloroplast fission IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0042646 plastid nucleoid IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043572 plastid fission IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045037 protein import into chloroplast stroma IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
MF GO:0070180 large ribosomal subunit rRNA binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0080158 obsolete chloroplast ribulose bisphosphate carboxylase complex biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0099402 plant organ development IEP HCCA
BP GO:1901259 chloroplast rRNA processing IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR003611 NUMOD3 111 137
No external refs found!