AT1G49760 (PAB8, PABP8)

Aliases : PAB8, PABP8

Description : poly(A) binding protein 8

Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G49760

Target	Alias	Description	ECC score	Gene Family Method
Adi_g011274	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Adi_g088081	PAB2, PABP2, ATPAB2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g112649	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
Ala_g06987	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
Ala_g15142	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.04	OrthoFinder output from all 47 species
Aop_g05955	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0060.g034731	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.04	OrthoFinder output from all 47 species
Cba_g10012	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.05	OrthoFinder output from all 47 species
Ceric.29G016700.1	PAB2, PABP2,...	mRNA poly-A-tail binding factor *(PABP) & original...	0.09	OrthoFinder output from all 47 species
Ceric.34G008600.1	PAB2, PABP2,...	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
Ceric.36G019600.1	PAB2, PABP2,...	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001264.28	PAB8, PABP8	Protein biosynthesis.translation initiation.mRNA...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021244.20	PAB8, PABP8	Protein biosynthesis.translation initiation.mRNA...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021493.3	FPA	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre01.g039300	PAB8, PABP8	Protein biosynthesis.translation initiation.mRNA...	0.05	OrthoFinder output from all 47 species
Ehy_g07029	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01022079001	PAB2, PABP2, ATPAB2	Protein biosynthesis.translation initiation.mRNA...	0.04	OrthoFinder output from all 47 species
LOC_Os09g02700.1	PAB8, PABP8,...	mRNA poly-A-tail binding factor (PABP)	0.06	OrthoFinder output from all 47 species
MA_111003g0010	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor (PABP)	0.04	OrthoFinder output from all 47 species
Mp7g18970.1	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor (PABP)	0.1	OrthoFinder output from all 47 species
Nbi_g14035	PAB8, PABP8	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Pir_g04520	PAB8, PABP8	mRNA poly-A-tail binding factor *(PABP) & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023696	PAB8, PABP8	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Sam_g10629	No alias	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
Sam_g52387	No alias	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
Smo101161	PAB2, PABP2, ATPAB2	Protein biosynthesis.translation initiation.mRNA...	0.04	OrthoFinder output from all 47 species
Solyc12g088720.2.1	PAB2, PABP2,...	mRNA poly-A-tail binding factor (PABP)	0.04	OrthoFinder output from all 47 species
Tin_g14974	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.03	OrthoFinder output from all 47 species
Tin_g29780	PAB8, PABP8	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e009430_P002	PAB2, PABP2,...	mRNA poly-A-tail binding factor (PABP)	0.05	OrthoFinder output from all 47 species
Zm00001e033592_P004	PAB8, PABP8,...	mRNA poly-A-tail binding factor (PABP)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0003743	translation initiation factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006164	purine nucleotide biosynthetic process	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004088	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005951	carbamoyl-phosphate synthase complex	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
BP	GO:0016036	cellular response to phosphate starvation	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	329	396
IPR000504	RRM_dom	135	203
IPR000504	RRM_dom	226	294
IPR000504	RRM_dom	47	117
IPR002004	PABP_HYD	580	645

External Links

No external refs found!

AT1G49760 (PAB8, PABP8)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation