AT1G49430 (LRD2, LACS2)

Aliases : LRD2, LACS2

Description : long-chain acyl-CoA synthetase 2

Gene families : OG0000612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G49430

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00117760	CER8, LACS1,...	Enzyme classification.EC_6 ligases.EC_6.2 ligase forming...	0.08	OrthoFinder output from all 47 species
Adi_g114074	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Aev_g04110	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.06	OrthoFinder output from all 47 species
Aob_g07369	LACS6, ATLACS6	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Aop_g06527	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene16145.t1	ATLACS7, LACS7,...	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene17472.t1	ATLACS7, LACS7,...	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g010150	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.24G023000.1	LACS4, Ceric.24G023000	EC_6.2 ligase forming carbon-sulfur bond & original...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020563.173	ATLACS7, LACS7	Long chain acyl-CoA synthetase 7, peroxisomal...	0.01	OrthoFinder output from all 47 species
Dac_g11566	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Dac_g13723	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.07	OrthoFinder output from all 47 species
Dcu_g08877	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.08	OrthoFinder output from all 47 species
Dde_g01611	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Ehy_g08481	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01028155001	CER8, LACS1	Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01031892001	LRD2, LACS2	Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana	0.09	OrthoFinder output from all 47 species
Gb_09959	LACS4	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
Gb_18621	LACS4	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Gb_21648	LACS6, ATLACS6	peroxisomal long-chain acyl-CoA synthetase	0.03	OrthoFinder output from all 47 species
Gb_32132	LACS4	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.12	OrthoFinder output from all 47 species
Gb_32723	LACS6, ATLACS6	Long chain acyl-CoA synthetase 6, peroxisomal...	0.04	OrthoFinder output from all 47 species
Gb_32724	ATLACS7, LACS7	Long chain acyl-CoA synthetase 7, peroxisomal...	0.04	OrthoFinder output from all 47 species
LOC_Os01g48910.2	LACS4, LOC_Os01g48910	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species
LOC_Os05g04170.1	CER8, LACS1,...	Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
LOC_Os11g35400.1	LRD2, LACS2,...	Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana...	0.12	OrthoFinder output from all 47 species
Len_g16036	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.05	OrthoFinder output from all 47 species
Len_g16147	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
MA_10432761g0010	LACS4	Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana...	0.09	OrthoFinder output from all 47 species
MA_652419g0010	LACS6, ATLACS6	Long chain acyl-CoA synthetase 7, peroxisomal...	0.04	OrthoFinder output from all 47 species
MA_839621g0010	No alias	Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana...	0.09	OrthoFinder output from all 47 species
Msp_g09778	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Msp_g11320	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Msp_g20518	ATLACS7, LACS7	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g03105	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.06	OrthoFinder output from all 47 species
Pnu_g15322	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Pnu_g31368	LACS6, ATLACS6	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Pp3c6_11410V3.1	LACS4, Pp3c6_11410	AMP-dependent synthetase and ligase family protein	0.02	OrthoFinder output from all 47 species
Ppi_g17117	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025894	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.02	OrthoFinder output from all 47 species
Sam_g15770	No alias	EC_6.2 ligase forming carbon-sulfur bond & original...	0.03	OrthoFinder output from all 47 species
Sam_g16833	No alias	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Solyc01g079240.3.1	CER8, LACS1,...	Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana...	0.11	OrthoFinder output from all 47 species
Solyc01g099100.4.1	LACS6, ATLACS6,...	peroxisomal long-chain acyl-CoA synthetase	0.04	OrthoFinder output from all 47 species
Solyc01g109180.4.1	LRD2, LACS2,...	Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana...	0.22	OrthoFinder output from all 47 species
Solyc09g075770.3.1	LACS6, ATLACS6,...	peroxisomal long-chain acyl-CoA synthetase	0.09	OrthoFinder output from all 47 species
Spa_g26451	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.08	OrthoFinder output from all 47 species
Spa_g40891	LACS6, ATLACS6	EC_6.2 ligase forming carbon-sulfur bond & original...	0.04	OrthoFinder output from all 47 species
Spa_g47685	LACS4	EC_6.2 ligase forming carbon-sulfur bond & original...	0.05	OrthoFinder output from all 47 species
Zm00001e024608_P001	LRD2, LACS2,...	Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana...	0.14	OrthoFinder output from all 47 species
Zm00001e040332_P001	CER8, LACS1,...	Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001676	long-chain fatty acid metabolic process	RCA	Interproscan
BP	GO:0002213	defense response to insect	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	TAS	Interproscan
BP	GO:0006633	fatty acid biosynthetic process	RCA	Interproscan
BP	GO:0006633	fatty acid biosynthetic process	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010025	wax biosynthetic process	IGI	Interproscan
BP	GO:0010143	cutin biosynthetic process	IMP	Interproscan
BP	GO:0010166	wax metabolic process	None	Extended
BP	GO:0010311	lateral root formation	IMP	Interproscan
MF	GO:0015645	fatty acid ligase activity	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016405	CoA-ligase activity	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	None	Extended
MF	GO:0016878	acid-thiol ligase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
MF	GO:0031957	very long-chain fatty acid-CoA ligase activity	IDA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0050832	defense response to fungus	IMP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901568	fatty acid derivative metabolic process	None	Extended
BP	GO:1901570	fatty acid derivative biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1905393	plant organ formation	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0010091	trichome branching	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010103	stomatal complex morphogenesis	IEP	HCCA
BP	GO:0010226	response to lithium ion	IEP	HCCA
BP	GO:0010321	regulation of vegetative phase change	IEP	HCCA
BP	GO:0010325	raffinose family oligosaccharide biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	HCCA
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0019825	oxygen binding	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
MF	GO:0030570	pectate lyase activity	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042538	hyperosmotic salinity response	IEP	HCCA
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048832	specification of plant organ number	IEP	HCCA
BP	GO:0048833	specification of floral organ number	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
MF	GO:0052722	fatty acid in-chain hydroxylase activity	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
BP	GO:0090626	plant epidermis morphogenesis	IEP	HCCA
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025110	AMP-bd_C	536	576
IPR000873	AMP-dep_Synth/Lig_com	53	526

External Links

No external refs found!

AT1G49430 (LRD2, LACS2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation