AT1G47250 (PAF2)

Aliases : PAF2

Description : 20S proteasome alpha subunit F2

Gene families : OG0003925 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003925_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G47250

Target	Alias	Description	ECC score	Gene Family Method
Adi_g006511	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Aev_g46714	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Ala_g10461	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Aop_g03101	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Aop_g04150	ARS5, PAF1, ATPSM30	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.06	OrthoFinder output from all 47 species
Aop_g37729	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
Ceric.06G076500.1	PAF2, Ceric.06G076500	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.21	ARS5, PAF1, ATPSM30	Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase...	0.05	OrthoFinder output from all 47 species
Cre06.g304300	PAF2	Protein degradation.26S proteasome.20S core...	0.09	OrthoFinder output from all 47 species
Dac_g31137	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
GSVIVT01009737001	PAF2	Protein degradation.26S proteasome.20S core...	0.07	OrthoFinder output from all 47 species
Gb_26474	PAF2	component alpha type-6 of 26S proteasome	0.05	OrthoFinder output from all 47 species
LOC_Os02g04100.1	ARS5, PAF1,...	component alpha type-6 of 26S proteasome	0.05	OrthoFinder output from all 47 species
Len_g14069	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
MA_10143842g0010	PAF2	Proteasome subunit alpha type-1-B OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_713708g0010	PAF2	Proteasome subunit alpha type-1-A OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp4g13080.1	PAF2	component alpha type-6 of 26S proteasome	0.09	OrthoFinder output from all 47 species
Nbi_g00448	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
Ppi_g04281	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Solyc04g080590.4.1	PAF2, Solyc04g080590	component alpha type-6 of 26S proteasome	0.1	OrthoFinder output from all 47 species
Tin_g04437	PAF2	EC_3.4 hydrolase acTing on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IDA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005839	proteasome core complex	TAS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905368	peptidase complex	None	Extended
CC	GO:1905369	endopeptidase complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000338	protein deneddylation	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006635	fatty acid beta-oxidation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
CC	GO:0008180	COP9 signalosome	IEP	HCCA
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	HCCA
BP	GO:0009062	fatty acid catabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0009828	plant-type cell wall loosening	IEP	HCCA
BP	GO:0009831	plant-type cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
BP	GO:0010387	COP9 signalosome assembly	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0016042	lipid catabolic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019395	fatty acid oxidation	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0030258	lipid modification	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0034440	lipid oxidation	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0035966	response to topologically incorrect protein	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044242	cellular lipid catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0051788	response to misfolded protein	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	29	213
IPR000426	Proteasome_asu_N	6	28

External Links

No external refs found!

AT1G47250 (PAF2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation