AT1G44110 (CYCA1;1)


Aliases : CYCA1;1

Description : Cyclin A1;1


Gene families : OG0001097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G44110
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 CYCA3;1,... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.21 OrthoFinder output from all 47 species
AMTR_s00048p00184670 CYCA2;4,... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 OrthoFinder output from all 47 species
AMTR_s00068p00198800 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.24 OrthoFinder output from all 47 species
Adi_g023459 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Adi_g039314 CYCA2;1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16144 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Ala_g21059 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Ala_g23638 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Ala_g25625 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.13 OrthoFinder output from all 47 species
Als_g03751 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Als_g14283 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Als_g52746 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Aop_g01772 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.13 OrthoFinder output from all 47 species
Aop_g04287 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Aop_g19060 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.18 OrthoFinder output from all 47 species
Aspi01Gene15105.t1 CYCA1;1, Aspi01Gene15105 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Aspi01Gene18499.t1 CYCA1;1, Aspi01Gene18499 regulatory protein *(TAM) involved in metaphase to... 0.11 OrthoFinder output from all 47 species
Azfi_s0003.g008079 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Azfi_s0006.g010440 CYCA1;1 not classified & original description: CDS=585-2150 0.1 OrthoFinder output from all 47 species
Azfi_s0022.g016140 CYCA1;1 not classified & original description: CDS=307-1776 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031411 CYCA1;1 not classified & original description: CDS=319-1644 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048725 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Ceric.08G046900.1 CYCA1;1, Ceric.08G046900 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Ceric.26G030100.1 CYCA1;1, Ceric.26G030100 regulatory protein *(TAM) involved in metaphase to... 0.21 OrthoFinder output from all 47 species
Ceric.30G011000.1 CYCA1;1, Ceric.30G011000 regulatory protein *(TAM) involved in metaphase to... 0.2 OrthoFinder output from all 47 species
Ceric.33G050700.1 CYCA1;1, Ceric.33G050700 regulatory protein *(TAM) involved in metaphase to... 0.16 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.67 CYCA1;1 Cyclin-A2-1 OS=Oryza sativa subsp. japonica 0.06 OrthoFinder output from all 47 species
Cre03.g207900 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 OrthoFinder output from all 47 species
Dac_g04219 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
Dac_g11514 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.1 OrthoFinder output from all 47 species
Dac_g13212 CYCA1;1 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g04793 CYC3B, CYCA2;2, CYC2BAT regulatory protein *(TAM) involved in metaphase to... 0.14 OrthoFinder output from all 47 species
Dcu_g12296 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Dcu_g31687 CYCA1;1 regulatory protein *(CYCA) of cell cycle & original... 0.1 OrthoFinder output from all 47 species
Dde_g25057 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
GSVIVT01008823001 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.3 OrthoFinder output from all 47 species
GSVIVT01009399001 CYCA3;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.17 OrthoFinder output from all 47 species
GSVIVT01035718001 CYC3B, CYCA2;2, CYC2BAT Cell cycle.regulation.cyclins.CYCA-type cyclin 0.08 OrthoFinder output from all 47 species
Gb_03779 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.12 OrthoFinder output from all 47 species
Gb_07594 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.16 OrthoFinder output from all 47 species
Gb_10619 CYCA1;1 cyclin (CYCA) 0.2 OrthoFinder output from all 47 species
LOC_Os01g13260.1 CYCA1;1, LOC_Os01g13260 cyclin (CYCA) 0.1 OrthoFinder output from all 47 species
LOC_Os03g41100.1 CYCA3;1, LOC_Os03g41100 cyclin (CYCA) 0.15 OrthoFinder output from all 47 species
LOC_Os12g31810.1 CYCA2;4, LOC_Os12g31810 cyclin (CYCA) 0.06 OrthoFinder output from all 47 species
LOC_Os12g39210.1 CYCA3;4, LOC_Os12g39210 cyclin (CYCA) 0.19 OrthoFinder output from all 47 species
Len_g04784 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Len_g08312 CYC3B, CYCA2;2, CYC2BAT regulatory protein *(CYCA) of cell cycle & original... 0.11 OrthoFinder output from all 47 species
Len_g21318 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Len_g32319 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Lfl_g27348 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.11 OrthoFinder output from all 47 species
Lfl_g27435 CYCA1;1 regulatory protein *(CYCA) of cell cycle & original... 0.08 OrthoFinder output from all 47 species
Lfl_g39997 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
MA_103138g0010 CYCA1;1 cyclin (CYCA) 0.15 OrthoFinder output from all 47 species
MA_28323g0010 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.11 OrthoFinder output from all 47 species
MA_6619g0010 CYCA1;1 cyclin (CYCA) 0.14 OrthoFinder output from all 47 species
MA_88982g0010 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.1 OrthoFinder output from all 47 species
Mp2g25500.1 CYCA1;1 cyclin (CYCA) 0.12 OrthoFinder output from all 47 species
Msp_g10135 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.2 OrthoFinder output from all 47 species
Msp_g12560 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.18 OrthoFinder output from all 47 species
Msp_g31552 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.04 OrthoFinder output from all 47 species
Nbi_g06697 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.15 OrthoFinder output from all 47 species
Nbi_g16546 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Nbi_g24493 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.18 OrthoFinder output from all 47 species
Ore_g35611 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Ppi_g05200 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.11 OrthoFinder output from all 47 species
Ppi_g07555 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Ppi_g31211 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.11 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008053 CYC3B, CYCA2;2, CYC2BAT regulatory protein *(CYCA) of cell cycle & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010609 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.1 OrthoFinder output from all 47 species
Sam_g12488 No alias regulatory protein *(TAM) involved in metaphase to... 0.11 OrthoFinder output from all 47 species
Sam_g12489 No alias regulatory protein *(TAM) involved in metaphase to... 0.11 OrthoFinder output from all 47 species
Sam_g28585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51377 No alias regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Smo442428 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.07 OrthoFinder output from all 47 species
Smo97411 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.07 OrthoFinder output from all 47 species
Solyc03g120440.3.1 CYCA2;4, Solyc03g120440 cyclin (CYCA) 0.05 OrthoFinder output from all 47 species
Solyc04g078310.3.1 CYCA3;1, Solyc04g078310 cyclin (CYCA) 0.12 OrthoFinder output from all 47 species
Solyc06g065680.3.1 CYCA2;4, Solyc06g065680 cyclin (CYCA) 0.09 OrthoFinder output from all 47 species
Solyc11g005090.2.1 CYCA1;1, Solyc11g005090 cyclin (CYCA) 0.15 OrthoFinder output from all 47 species
Solyc12g088470.3.1 CYCA3;1, Solyc12g088470 cyclin (CYCA) 0.05 OrthoFinder output from all 47 species
Solyc12g088500.2.1 CYCA3;1, Solyc12g088500 cyclin (CYCA) 0.04 OrthoFinder output from all 47 species
Solyc12g088520.2.1 CYCA3;1, Solyc12g088520 cyclin (CYCA) 0.08 OrthoFinder output from all 47 species
Spa_g11240 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
Spa_g11241 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Spa_g11267 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Spa_g30899 CYCA1;1 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Tin_g03369 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.11 OrthoFinder output from all 47 species
Tin_g30126 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.1 OrthoFinder output from all 47 species
Zm00001e003049_P002 CYCA3;1, Zm00001e003049 cyclin (CYCA) 0.04 OrthoFinder output from all 47 species
Zm00001e005138_P001 CYCA3;1, Zm00001e005138 cyclin (CYCA) 0.07 OrthoFinder output from all 47 species
Zm00001e013250_P002 CYC3B, CYCA2;2,... cyclin (CYCA) 0.07 OrthoFinder output from all 47 species
Zm00001e017335_P001 CYCA1;1, Zm00001e017335 cyclin (CYCA) 0.15 OrthoFinder output from all 47 species
Zm00001e017993_P001 CYCA3;1, Zm00001e017993 cyclin (CYCA) 0.03 OrthoFinder output from all 47 species
Zm00001e026125_P002 CYCA1;1, Zm00001e026125 cyclin (CYCA) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000911 cytokinesis by cell plate formation RCA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0010103 stomatal complex morphogenesis RCA Interproscan
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle RCA Interproscan
BP GO:0010583 response to cyclopentenone IEP Interproscan
BP GO:0010583 response to cyclopentenone RCA Interproscan
BP GO:0016458 obsolete gene silencing RCA Interproscan
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity ISS Interproscan
BP GO:0016572 obsolete histone phosphorylation RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0042127 regulation of cell population proliferation RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle ISS Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000212 meiotic spindle organization IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000793 condensed chromosome IEP HCCA
CC GO:0000794 condensed nuclear chromosome IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005871 kinesin complex IEP HCCA
CC GO:0005872 minus-end kinesin complex IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007000 nucleolus organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007053 spindle assembly involved in male meiosis IEP HCCA
BP GO:0007349 cellularization IEP HCCA
MF GO:0008569 minus-end-directed microtubule motor activity IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009558 embryo sac cellularization IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009957 epidermal cell fate specification IEP HCCA
BP GO:0009971 anastral spindle assembly involved in male meiosis IEP HCCA
BP GO:0010440 stomatal lineage progression IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0055048 anastral spindle assembly IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090306 meiotic spindle assembly IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
InterPro domains Description Start Stop
IPR006671 Cyclin_N 197 323
IPR004367 Cyclin_C-dom 326 445
No external refs found!