AT1G43170 (RP1, RPL3A, emb2207, ARP1)

Aliases : RP1, RPL3A, emb2207, ARP1

Description : ribosomal protein 1

Gene families : OG0001891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001891_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G43170

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00269670	RP1, RPL3A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
AMTR_s00060p00174830	RP1, RPL3A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
AMTR_s00135p00091990	RP1, RPL3A,...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	OrthoFinder output from all 47 species
Adi_g045425	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g105187	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aev_g23904	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Als_g04821	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g32693	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aob_g04930	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g10507	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Aop_g11770	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aspi01Gene27299.t1	RPL3B, ARP2,...	component *(uL3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0015.g013966	RP1, RPL3A, emb2207, ARP1	component *(uL3) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Azfi_s0113.g045879	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Cba_g06735	RP1, RPL3A, emb2207, ARP1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g12982	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g24008	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.22G040700.1	RPL3B, ARP2,...	component *(uL3) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ceric.26G061200.1	RPL3B, ARP2,...	component *(uL3) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000025.50	RPL3B, ARP2	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	OrthoFinder output from all 47 species
Cre10.g417700	RP1, RPL3A, emb2207, ARP1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Dac_g13025	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Dde_g24590	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dde_g49884	RPL3B, ARP2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g06618	RP1, RPL3A, emb2207, ARP1	component *(uL3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g06763	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01022284001	No alias	60S ribosomal protein L3 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
GSVIVT01023241001	RPL3B, ARP2	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
GSVIVT01034555001	RP1, RPL3A, emb2207, ARP1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	OrthoFinder output from all 47 species
Gb_11963	RP1, RPL3A, emb2207, ARP1	component RPL3 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Gb_35746	RP1, RPL3A, emb2207, ARP1	component RPL3 of LSU proteome component	0.13	OrthoFinder output from all 47 species
LOC_Os11g06750.1	RP1, RPL3A,...	component RPL3 of LSU proteome component	0.23	OrthoFinder output from all 47 species
LOC_Os12g07010.1	RP1, RPL3A,...	component RPL3 of LSU proteome component	0.31	OrthoFinder output from all 47 species
Len_g18215	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Len_g28843	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g23605	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_10432758g0010	RP1, RPL3A, emb2207, ARP1	component RPL3 of LSU proteome component	0.16	OrthoFinder output from all 47 species
MA_124178g0010	RPL3B, ARP2	component RPL3 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Mp1g18990.1	RPL3B, ARP2	component RPL3 of LSU proteome component	0.25	OrthoFinder output from all 47 species
Msp_g08488	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Nbi_g04174	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ore_g07397	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ore_g42353	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c10_25460V3.1	RPL3B, ARP2, Pp3c10_25460	R-protein L3 B	0.1	OrthoFinder output from all 47 species
Ppi_g32376	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007060	ATHSP70, HSP70	chaperone *(Hsp70) & original description: CDS=161-3865	0.04	OrthoFinder output from all 47 species
Sam_g04295	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Sam_g09820	No alias	component *(uL3) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g09821	No alias	component *(uL3) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Sam_g40822	No alias	component *(uL3) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Smo270706	RP1, RPL3A, emb2207, ARP1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
Solyc01g104590.3.1	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.33	OrthoFinder output from all 47 species
Spa_g10027	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Spa_g48300	RP1, RPL3A, emb2207, ARP1	not classified & original description: none	0.15	OrthoFinder output from all 47 species
Spa_g55689	RPL3B, ARP2	not classified & original description: none	0.21	OrthoFinder output from all 47 species
Tin_g00740	RPL3B, ARP2	component *(uL3) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Zm00001e001224_P002	RP1, RPL3A,...	component RPL3 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Zm00001e008122_P001	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Zm00001e008127_P001	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Zm00001e009061_P001	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.18	OrthoFinder output from all 47 species
Zm00001e009065_P002	RPL3B, ARP2,...	component RPL3 of LSU proteome component	0.19	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022625	cytosolic large ribosomal subunit	TAS	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	IEP	HCCA
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	HCCA
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007005	mitochondrion organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008235	metalloexopeptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009553	embryo sac development	IEP	HCCA
BP	GO:0009566	fertilization	IEP	HCCA
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
CC	GO:0046658	obsolete anchored component of plasma membrane	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071731	response to nitric oxide	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	1	370

External Links

No external refs found!

AT1G43170 (RP1, RPL3A, emb2207, ARP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation