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  5. AT1G34410

AT1G34410 (ARF21)


Aliases : ARF21

Description : auxin response factor 21


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G34410
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT1G43950 ARF23 auxin response factor 23 0.01 OrthoFinder output from all 47 species
AT1G77850 ARF17 auxin response factor 17 0.04 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.05 OrthoFinder output from all 47 species
ATMG00940 ORF164 DNA binding 0.02 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os10g33940.1 ARF16, LOC_Os10g33940 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
MA_2237g0020 ARF16 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc01g096070.3.1 ARF9, Solyc01g096070 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e015164_P002 ARF10, Zm00001e015164 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription TAS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
BP GO:0006814 sodium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015081 sodium ion transmembrane transporter activity IEP HCCA
MF GO:0015385 sodium:proton antiporter activity IEP HCCA
MF GO:0015386 potassium:proton antiporter activity IEP HCCA
MF GO:0022821 solute:potassium antiporter activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0035725 sodium ion transmembrane transport IEP HCCA
MF GO:0051139 metal cation:proton antiporter activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140828 metal cation:monoatomic cation antiporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 126 227
IPR033389 AUX/IAA_dom 506 547
IPR010525 ARF_dom 252 330
No external refs found!