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AT1G34170 (ARF13)


Aliases : ARF13

Description : AUXIN RESPONSE FACTOR 13


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G34170
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00215270 ARF21,... Auxin response factor 7 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
AMTR_s00061p00077000 ARF18,... Auxin response factor 18 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT1G34390 ARF22 auxin response factor 22 0.05 OrthoFinder output from all 47 species
Adi_g024483 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075709 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40259 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0013.g013413 ARF10 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026103 ARF6 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g07132 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os10g33940.1 ARF16, LOC_Os10g33940 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Solyc01g096070.3.1 ARF9, Solyc01g096070 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription TAS Interproscan
BP GO:0006863 purine nucleobase transport RCA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004364 glutathione transferase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
BP GO:0080113 regulation of seed growth IEP HCCA
BP GO:2000014 regulation of endosperm development IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 124 227
IPR010525 ARF_dom 253 331
No external refs found!