AT1G31730


Description : Adaptin family protein


Gene families : OG0004559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004559_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G31730
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00117p00120670 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.vacuolar... 0.04 OrthoFinder output from all 47 species
Azfi_s0048.g030676 No alias large subunit epsilon of AP-4 vacuole cargo adaptor... 0.03 OrthoFinder output from all 47 species
Ceric.09G002800.1 Ceric.09G002800 large subunit epsilon of AP-4 vacuole cargo adaptor... 0.04 OrthoFinder output from all 47 species
Cre06.g310000 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.04 OrthoFinder output from all 47 species
Dcu_g01987 No alias large subunit epsilon of AP-4 vacuole cargo adaptor... 0.04 OrthoFinder output from all 47 species
GSVIVT01036887001 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.05 OrthoFinder output from all 47 species
LOC_Os01g68750.1 LOC_Os01g68750 large subunit epsilon of AP-4 vacuole cargo adaptor complex 0.09 OrthoFinder output from all 47 species
Lfl_g03471 No alias large subunit epsilon of AP-4 vacuole cargo adaptor... 0.03 OrthoFinder output from all 47 species
MA_218198g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g01469 No alias large subunit epsilon of AP-4 vacuole cargo adaptor... 0.02 OrthoFinder output from all 47 species
Smo170737 No alias Vesicle trafficking.endomembrane trafficking.vacuolar... 0.03 OrthoFinder output from all 47 species
Solyc08g075310.4.1 Solyc08g075310 large subunit epsilon of AP-4 vacuole cargo adaptor complex 0.05 OrthoFinder output from all 47 species
Zm00001e018853_P002 Zm00001e018853 large subunit epsilon of AP-4 vacuole cargo adaptor complex 0.07 OrthoFinder output from all 47 species
Zm00001e028486_P002 Zm00001e028486 large subunit epsilon of AP-4 vacuole cargo adaptor complex 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0006007 glucose catabolic process RCA Interproscan
BP GO:0006487 protein N-linked glycosylation RCA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
MF GO:0030276 clathrin binding ISS Interproscan
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
MF GO:0000049 tRNA binding IEP HCCA
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
BP GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004534 5'-3' exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005876 spindle microtubule IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006409 tRNA export from nucleus IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006482 protein demethylation IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008214 protein dealkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008409 5'-3' exonuclease activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009741 response to brassinosteroid IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010586 miRNA metabolic process IEP HCCA
BP GO:0010587 miRNA catabolic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016577 histone demethylation IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030121 AP-1 adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP HCCA
CC GO:0031209 SCAR complex IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033169 histone H3-K9 demethylation IEP HCCA
BP GO:0034661 ncRNA catabolic process IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0040007 growth IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042800 histone H3K4 methyltransferase activity IEP HCCA
BP GO:0043200 response to amino acid IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048440 carpel development IEP HCCA
BP GO:0048443 stamen development IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048587 regulation of short-day photoperiodism, flowering IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051031 tRNA transport IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051125 regulation of actin nucleation IEP HCCA
BP GO:0051127 positive regulation of actin nucleation IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0051495 positive regulation of cytoskeleton organization IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0070076 histone lysine demethylation IEP HCCA
BP GO:0070988 demethylation IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
MF GO:0140938 histone H3 methyltransferase activity IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
BP GO:1902905 positive regulation of supramolecular fiber organization IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000028 regulation of photoperiodism, flowering IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR002553 Clathrin/coatomer_adapt-like_N 58 594
No external refs found!