AT1G28300 (LEC2)

Aliases : LEC2

Description : AP2/B3-like transcriptional factor family protein

Gene families : OG0001487 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001487_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G28300

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00026560	ABI3, SIS10,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AT3G24650	ABI3, SIS10	AP2/B3-like transcriptional factor family protein	0.06	OrthoFinder output from all 47 species
Ala_g19218	ABI3, SIS10	transcription factor *(ABI3) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g28909	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g69058	FUS3	LAV-ABI3-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene00966.t1	ABI3, SIS10,...	transcription factor *(ABI3) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g31917	ABI3, SIS10	transcription factor *(ABI3) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01028540001	ABI3, SIS10	RNA biosynthesis.transcriptional activation.B3...	0.12	OrthoFinder output from all 47 species
GSVIVT01033007001	FUS3	RNA biosynthesis.transcriptional activation.B3...	0.1	OrthoFinder output from all 47 species
Gb_01768	ABI3, SIS10	transcription factor (LAV-ABI3)	0.03	OrthoFinder output from all 47 species
LOC_Os01g68370.1	ABI3, SIS10,...	transcription factor (LAV-ABI3)	0.02	OrthoFinder output from all 47 species
Len_g59917	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_66505g0010	ABI3, SIS10	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_66505g0020	ABI3, SIS10	transcription factor (LAV-ABI3)	0.03	OrthoFinder output from all 47 species
Mp2g08260.1	ABI3, SIS10	transcription factor (LAV-ABI3)	0.04	OrthoFinder output from all 47 species
Ore_g18873	ABI3, SIS10	transcription factor *(ABI3) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g33846	ABI3, SIS10	transcription factor *(ABI3) & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g26812	ABI3, SIS10	transcription factor *(ABI3) & original description: none	0.07	OrthoFinder output from all 47 species
Pp3c18_16640V3.1	ABI3, SIS10, Pp3c18_16640	AP2/B3-like transcriptional factor family protein	0.01	OrthoFinder output from all 47 species
Ppi_g16616	ABI3, SIS10	transcription factor *(ABI3) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g094460.2.1	FUS3, Solyc02g094460	transcription factor (LAV-ABI3)	0.06	OrthoFinder output from all 47 species
Solyc06g083590.4.1	ABI3, SIS10,...	transcription factor (LAV-ABI3)	0.05	OrthoFinder output from all 47 species
Solyc06g083600.3.1	ABI3, SIS10,...	transcription factor (LAV-ABI3)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010262	somatic embryogenesis	IMP	Interproscan
BP	GO:0010344	seed oilbody biogenesis	IMP	Interproscan
BP	GO:0010431	seed maturation	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010600	regulation of auxin biosynthetic process	None	Extended
BP	GO:0010601	positive regulation of auxin biosynthetic process	IMP	Interproscan
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031099	regeneration	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032350	regulation of hormone metabolic process	None	Extended
BP	GO:0032352	positive regulation of hormone metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046885	regulation of hormone biosynthetic process	None	Extended
BP	GO:0046886	positive regulation of hormone biosynthetic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090354	regulation of auxin metabolic process	None	Extended
BP	GO:0090355	positive regulation of auxin metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:monoatomic cation symporter activity	IEP	HCCA
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0006110	regulation of glycolytic process	IEP	HCCA
BP	GO:0006140	regulation of nucleotide metabolic process	IEP	HCCA
BP	GO:0006638	neutral lipid metabolic process	IEP	HCCA
BP	GO:0006639	acylglycerol metabolic process	IEP	HCCA
BP	GO:0006641	triglyceride metabolic process	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
MF	GO:0008028	monocarboxylic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0008506	sucrose:proton symporter activity	IEP	HCCA
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0008515	sucrose transmembrane transporter activity	IEP	HCCA
MF	GO:0009669	sucrose:monoatomic cation symporter activity	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
MF	GO:0010294	abscisic acid glucosyltransferase activity	IEP	HCCA
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015154	disaccharide transmembrane transporter activity	IEP	HCCA
MF	GO:0015157	oligosaccharide transmembrane transporter activity	IEP	HCCA
MF	GO:0015225	biotin transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0019432	triglyceride biosynthetic process	IEP	HCCA
MF	GO:0031176	endo-1,4-beta-xylanase activity	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0042325	regulation of phosphorylation	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
MF	GO:0042887	amide transmembrane transporter activity	IEP	HCCA
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0043470	regulation of carbohydrate catabolic process	IEP	HCCA
BP	GO:0046460	neutral lipid biosynthetic process	IEP	HCCA
BP	GO:0046463	acylglycerol biosynthetic process	IEP	HCCA
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	HCCA
MF	GO:0047215	indole-3-acetate beta-glucosyltransferase activity	IEP	HCCA
BP	GO:0048316	seed development	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
MF	GO:0080044	quercetin 7-O-glucosyltransferase activity	IEP	HCCA
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	HCCA
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	HCCA
MF	GO:0097599	xylanase activity	IEP	HCCA
BP	GO:1900542	regulation of purine nucleotide metabolic process	IEP	HCCA
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	HCCA
BP	GO:1901957	regulation of cutin biosynthetic process	IEP	HCCA
BP	GO:1901959	positive regulation of cutin biosynthetic process	IEP	HCCA
BP	GO:1903578	regulation of ATP metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	172	266

External Links

No external refs found!

AT1G28300 (LEC2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation