AT1G23410

Description : Ribosomal protein S27a / Ubiquitin family protein

Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G23410
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00094950	UBQ6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
AT2G36170	No alias	Ubiquitin supergroup;Ribosomal protein L40e	0.07	OrthoFinder output from all 47 species
AT2G47110	UBQ6	ubiquitin 6	0.08	OrthoFinder output from all 47 species
AT3G52590	UBQ1, EMB2167,...	ubiquitin extension protein 1	0.08	OrthoFinder output from all 47 species
AT3G62250	UBQ5	ubiquitin 5	0.07	OrthoFinder output from all 47 species
Adi_g042217	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g22856	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g31252	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g28227	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g12224	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g16439	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g30723	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g64104	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene69391.t1	Aspi01Gene69391	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g37486	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.08G035500.1	Ceric.08G035500	component *(eL40) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.21G057000.1	UBQ6, Ceric.21G057000	component *(eS31) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ceric.22G050200.1	UBQ6, Ceric.22G050200	component *(eS31) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.27G040600.1	Ceric.27G040600	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.31G024800.1	UBQ6, Ceric.31G024800	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.50	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre01.g007051	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Cre06.g273600	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Dac_g17740	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g26143	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g46245	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01012906001	No alias	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01033876001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01038617001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Gb_15027	UBQ6	component RPS27a of SSU proteome	0.07	OrthoFinder output from all 47 species
Gb_40288	UBQ6	component RPS27a of SSU proteome	0.04	OrthoFinder output from all 47 species
Gb_41257	No alias	component RPL40 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os01g22490.1	UBQ6, LOC_Os01g22490	component RPS27a of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os03g13170.1	LOC_Os03g13170	component RPL40 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os05g06770.1	UBQ6, LOC_Os05g06770	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os09g39500.1	LOC_Os09g39500	component RPL40 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os10g34990.1	LOC_Os10g34990	component RPS27a of SSU proteome	0.02	OrthoFinder output from all 47 species
Len_g14648	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Len_g27536	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.03	OrthoFinder output from all 47 species
Len_g40842	UBQ11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_13101g0020	No alias	component RPL40 of LSU proteome component	0.05	OrthoFinder output from all 47 species
MA_529552g0010	UBQ6	component RPS27a of SSU proteome	0.07	OrthoFinder output from all 47 species
MA_9129425g0010	No alias	component RPL40 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp7g12760.1	UBQ6	component RPS27a of SSU proteome	0.07	OrthoFinder output from all 47 species
Mp8g00780.1	No alias	component RPL40 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Msp_g06697	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Msp_g24177	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Msp_g34148	UBQ11	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g38968	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pir_g04702	UBQ14	UBQ ubiquitin-fold protein & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c10_25270V3.1	Pp3c10_25270	ubiquitin extension protein 1	0.05	OrthoFinder output from all 47 species
Pp3c12_5640V3.1	UBQ6, Pp3c12_5640	ubiquitin 6	0.05	OrthoFinder output from all 47 species
Pp3c12_5760V3.1	UBQ6, Pp3c12_5760	ubiquitin 6	0.05	OrthoFinder output from all 47 species
Pp3c20_23170V3.1	Pp3c20_23170	ubiquitin extension protein 1	0.03	OrthoFinder output from all 47 species
Pp3c24_430V3.1	Pp3c24_430	ubiquitin extension protein 1	0.05	OrthoFinder output from all 47 species
Pp3c4_19000V3.1	UBQ6, Pp3c4_19000	ubiquitin 6	0.04	OrthoFinder output from all 47 species
Pp3c8_14230V3.1	UBQ6, Pp3c8_14230	ubiquitin 6	0.02	OrthoFinder output from all 47 species
Ppi_g04808	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g21361	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014510	UBQ6	not classified & original description: CDS=1-258	0.03	OrthoFinder output from all 47 species
Sam_g07359	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g07360	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g07364	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g20114	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g26881	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo111605	UBQ6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc01g068045.1.1	UBQ6, Solyc01g068045	component RPS27a of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc03g082570.4.1	Solyc03g082570	component RPL40 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Solyc08g083120.3.1	Solyc08g083120	component RPL40 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Solyc12g099025.1.1	UBQ6, Solyc12g099025	component RPS27a of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g29603	UBQ6	component *(eS31) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Spa_g43571	No alias	component *(eS31) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g05310	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Tin_g28918	No alias	component *(eL40) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e000962_P001	Zm00001e000962	component RPL40 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e009474_P001	Zm00001e009474	component RPL40 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e026237_P001	UBQ6, Zm00001e026237	component RPS27a of SSU proteome	0.06	OrthoFinder output from all 47 species
Zm00001e028916_P001	UBQ6, Zm00001e028916	component RPS27a of SSU proteome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	RCA	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010393	galacturonan metabolic process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034406	cell wall beta-glucan metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0052541	plant-type cell wall cellulose metabolic process	RCA	Interproscan
BP	GO:0052546	cell wall pectin metabolic process	RCA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	HCCA
MF	GO:0004071	aspartate-ammonia ligase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006528	asparagine metabolic process	IEP	HCCA
BP	GO:0006529	asparagine biosynthetic process	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
MF	GO:0016211	ammonia ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	HCCA
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002906	Ribosomal_S27a	102	147
IPR000626	Ubiquitin-like_dom	3	74

External Links

No external refs found!

AT1G23410

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation