AT1G21720 (PBC1)

Aliases : PBC1

Description : proteasome beta subunit C1

Gene families : OG0004036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004036_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G21720

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00168080	PBC1,...	Protein degradation.26S proteasome.20S core...	0.03	OrthoFinder output from all 47 species
Adi_g018669	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Aev_g00417	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Als_g00265	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Als_g45968	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Aob_g01174	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Aop_g00275	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.06	OrthoFinder output from all 47 species
Azfi_s0008.g011490	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Ceric.13G038700.1	PBC1, Ceric.13G038700	beta-type-3 component *(PBC) of 26S proteasome &...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000826.22	PBC1	Protein degradation.26S proteasome.20S core...	0.05	OrthoFinder output from all 47 species
Cre06.g267500	PBC1	Protein degradation.26S proteasome.20S core...	0.2	OrthoFinder output from all 47 species
Dac_g10913	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Dcu_g35364	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.07	OrthoFinder output from all 47 species
Dde_g03144	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Ehy_g03351	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
GSVIVT01008836001	PBC1	Protein degradation.26S proteasome.20S core...	0.11	OrthoFinder output from all 47 species
Gb_09326	PBC1	component beta type-3 of 26S proteasome	0.05	OrthoFinder output from all 47 species
Gb_29749	PBC1	component beta type-3 of 26S proteasome	0.07	OrthoFinder output from all 47 species
LOC_Os06g43570.1	PBC1, LOC_Os06g43570	component beta type-3 of 26S proteasome	0.1	OrthoFinder output from all 47 species
Len_g24778	PBC2	beta-type-3 component *(PBC) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
MA_70161g0010	PBC1	component beta type-3 of 26S proteasome	0.03	OrthoFinder output from all 47 species
MA_9526163g0010	PBC1	component beta type-3 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Mp7g15370.1	PBC1	component beta type-3 of 26S proteasome	0.13	OrthoFinder output from all 47 species
Msp_g01419	PBC1	beta-type-3 component *(PBC) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Sam_g51100	No alias	beta-type-3 component *(PBC) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Smo266913	PBC1	Protein degradation.26S proteasome.20S core...	0.02	OrthoFinder output from all 47 species
Solyc04g009410.3.1	PBC1, Solyc04g009410	component beta type-3 of 26S proteasome	0.17	OrthoFinder output from all 47 species
Zm00001e013846_P001	PBC1, Zm00001e013846	component beta type-3 of 26S proteasome	0.08	OrthoFinder output from all 47 species
Zm00001e030465_P001	PBC1, Zm00001e030465	component beta type-3 of 26S proteasome	0.06	OrthoFinder output from all 47 species
Zm00001e037487_P001	PBC1, Zm00001e037487	component beta type-3 of 26S proteasome	0.14	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IDA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005839	proteasome core complex	TAS	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006096	glycolytic process	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006165	nucleoside diphosphate phosphorylation	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006635	fatty acid beta-oxidation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006757	ATP generation from ADP	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	ISS	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009062	fatty acid catabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009132	nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009135	purine nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009185	ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009404	toxin metabolic process	None	Extended
BP	GO:0009407	toxin catabolic process	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019395	fatty acid oxidation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0030258	lipid modification	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034440	lipid oxidation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043248	proteasome assembly	RCA	Interproscan
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046031	ADP metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
BP	GO:0046939	nucleotide phosphorylation	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0080129	proteasome core complex assembly	RCA	Interproscan
CC	GO:0098588	bounding membrane of organelle	None	Extended
BP	GO:0098754	detoxification	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905368	peptidase complex	None	Extended
CC	GO:1905369	endopeptidase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000919	cell plate assembly	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005819	spindle	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006261	DNA-templated DNA replication	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009408	response to heat	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
CC	GO:0009504	cell plate	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009642	response to light intensity	IEP	HCCA
BP	GO:0009646	response to absence of light	IEP	HCCA
BP	GO:0009647	skotomorphogenesis	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0009920	cell plate formation involved in plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016925	protein sumoylation	IEP	HCCA
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0031463	Cul3-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	7	189

External Links

No external refs found!

AT1G21720 (PBC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation