AT1G12040 (LRX1)

Aliases : LRX1

Description : leucine-rich repeat/extensin 1

Gene families : OG0000448 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000448_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G12040
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00271610	evm_27.TU.AmTr_v1...	Cell wall.cell wall proteins.hydroxyproline-rich...	0.04	OrthoFinder output from all 47 species
AMTR_s00160p00027170	evm_27.TU.AmTr_v1...	Cell wall.cell wall proteins.hydroxyproline-rich...	0.05	OrthoFinder output from all 47 species
AT1G49490	No alias	Leucine-rich repeat (LRR) family protein	0.04	OrthoFinder output from all 47 species
AT2G15880	No alias	Leucine-rich repeat (LRR) family protein	0.05	OrthoFinder output from all 47 species
AT3G19020	No alias	Leucine-rich repeat (LRR) family protein	0.05	OrthoFinder output from all 47 species
AT3G19320	No alias	Leucine-rich repeat (LRR) family protein	0.1	OrthoFinder output from all 47 species
AT3G22800	No alias	Leucine-rich repeat (LRR) family protein	0.04	OrthoFinder output from all 47 species
AT4G06744	No alias	Leucine-rich repeat (LRR) family protein	0.05	OrthoFinder output from all 47 species
AT4G13340	No alias	Leucine-rich repeat (LRR) family protein	0.04	OrthoFinder output from all 47 species
AT4G18670	No alias	Leucine-rich repeat (LRR) family protein	0.05	OrthoFinder output from all 47 species
AT4G28380	No alias	Leucine-rich repeat (LRR) family protein	0.06	OrthoFinder output from all 47 species
AT4G33970	No alias	Leucine-rich repeat (LRR) family protein	0.06	OrthoFinder output from all 47 species
Adi_g085610	No alias	LRR-domain extensin & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g03898	No alias	LRR-domain extensin & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g04035	No alias	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g26231	LRX2	LRR-domain extensin & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03771	LRX2	LRR-domain extensin & original description: none	0.02	OrthoFinder output from all 47 species
Als_g04968	LRX2	LRR-domain extensin & original description: none	0.02	OrthoFinder output from all 47 species
Als_g39238	LRX2	LRR-domain extensin & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g18015	LRX2	LRR-domain extensin & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g21090	No alias	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g21238	LRX2	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene01034.t1	LRX2, Aspi01Gene01034	LRR-domain extensin & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene33154.t1	Aspi01Gene33154	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene53230.t1	LRX2, Aspi01Gene53230	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000464	No alias	LRR-domain extensin & original description: CDS=1-1719	0.04	OrthoFinder output from all 47 species
Azfi_s0008.g011627	LRX2	LRR-domain extensin & original description: CDS=1-1815	0.03	OrthoFinder output from all 47 species
Azfi_s0013.g013083	LRX2	not classified & original description: CDS=228-2453	0.03	OrthoFinder output from all 47 species
Cba_g03151	No alias	LRR-domain extensin & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g14310	LRX2	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.16G022500.1	Ceric.16G022500	LRR-domain extensin & original description:...	0.1	OrthoFinder output from all 47 species
Ceric.17G055900.1	Ceric.17G055900	LRR-domain extensin & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.24G073600.1	LRX2, Ceric.24G073600	LRR-domain extensin & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.25G069300.1	LRX2, Ceric.25G069300	LRR-domain extensin & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.32G025000.1	Ceric.32G025000	LRR-domain extensin & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g10806	LRX2	LRR-domain extensin & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g15319	No alias	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g36028	No alias	LRR-domain extensin & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g11931	No alias	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g13236	LRX2	LRR-domain extensin & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g15033	LRX2	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g47264	No alias	LRR-domain extensin & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g31890	LRX2	LRR-domain extensin & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01020574001	No alias	Cell wall.cell wall proteins.hydroxyproline-rich...	0.05	OrthoFinder output from all 47 species
GSVIVT01031702001	No alias	Uncharacterized protein At4g06744 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01031843001	No alias	Cell wall.cell wall proteins.hydroxyproline-rich...	0.05	OrthoFinder output from all 47 species
Gb_10910	LRX2	LRR-domain extensin	0.03	OrthoFinder output from all 47 species
Gb_26318	No alias	LRR-domain extensin	0.03	OrthoFinder output from all 47 species
Gb_29819	LRX2	LRR-domain extensin	0.06	OrthoFinder output from all 47 species
LOC_Os01g41120.1	LOC_Os01g41120	LRR-domain extensin	0.07	OrthoFinder output from all 47 species
LOC_Os02g40260.1	LOC_Os02g40260	Uncharacterized protein At4g06744 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
LOC_Os03g43650.1	LOC_Os03g43650	LRR-domain extensin	0.04	OrthoFinder output from all 47 species
LOC_Os03g58110.1	LOC_Os03g58110	LRR-domain extensin	0.05	OrthoFinder output from all 47 species
LOC_Os04g42620.1	LOC_Os04g42620	Uncharacterized protein At4g06744 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os05g08770.2	LOC_Os05g08770	LRR-domain extensin	0.04	OrthoFinder output from all 47 species
LOC_Os05g09640.1	LOC_Os05g09640	Leucine-rich repeat extensin-like protein 4...	0.04	OrthoFinder output from all 47 species
Len_g38364	No alias	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g14745	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g17909	No alias	LRR-domain extensin & original description: none	0.04	OrthoFinder output from all 47 species
Mp2g25390.1	No alias	Leucine-rich repeat extensin-like protein 4...	0.02	OrthoFinder output from all 47 species
Msp_g07695	No alias	LRR-domain extensin & original description: none	0.05	OrthoFinder output from all 47 species
Msp_g39205	No alias	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g16811	No alias	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g23899	LRX2	LRR-domain extensin & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g03283	LRX2	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g11851	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ore_g30505	No alias	LRR-domain extensin & original description: none	0.06	OrthoFinder output from all 47 species
Pir_g08931	No alias	LRR-domain extensin & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g05847	LRX2	LRR-domain extensin & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011513	No alias	LRR-domain extensin & original description: CDS=1-1296	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012064	No alias	LRR-domain extensin & original description: CDS=1-1452	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g012995	LRX2	not classified & original description: CDS=401-2401	0.03	OrthoFinder output from all 47 species
Smo81544	LRX2	Cell wall.cell wall proteins.hydroxyproline-rich...	0.03	OrthoFinder output from all 47 species
Solyc01g108900.4.1	Solyc01g108900	LRR-domain extensin	0.04	OrthoFinder output from all 47 species
Solyc04g078560.1.1	Solyc04g078560	Uncharacterized protein At4g06744 OS=Arabidopsis...	0.07	OrthoFinder output from all 47 species
Solyc07g053840.1.1	Solyc07g053840	LRR-domain extensin	0.05	OrthoFinder output from all 47 species
Solyc09g082530.3.1	Solyc09g082530	LRR-domain extensin	0.03	OrthoFinder output from all 47 species
Solyc10g050110.1.1	Solyc10g050110	Uncharacterized protein At4g06744 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc11g005150.3.1	LRX2, Solyc11g005150	LRR-domain extensin	0.03	OrthoFinder output from all 47 species
Solyc12g088950.3.1	Solyc12g088950	Pollen-specific leucine-rich repeat extensin-like...	0.04	OrthoFinder output from all 47 species
Spa_g05733	LRX2	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g09054	No alias	LRR-domain extensin & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g27071	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g37100	LRX2	LRR-domain extensin & original description: none	0.1	OrthoFinder output from all 47 species
Spa_g51371	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g53147	LRX2	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g02020	No alias	LRR-domain extensin & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e005974_P001	Zm00001e005974	LRR-domain extensin	0.05	OrthoFinder output from all 47 species
Zm00001e011874_P001	Zm00001e011874	LRR-domain extensin	0.06	OrthoFinder output from all 47 species
Zm00001e017627_P001	LRX2, Zm00001e017627	Pollen-specific leucine-rich repeat extensin-like...	0.03	OrthoFinder output from all 47 species
Zm00001e041184_P001	Zm00001e041184	Uncharacterized protein At4g06744 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	IMP	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005199	structural constituent of cell wall	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009505	plant-type cell wall	IDA	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009826	unidimensional cell growth	IMP	Interproscan
MF	GO:0009927	histidine phosphotransfer kinase activity	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010054	trichoblast differentiation	IMP	Interproscan
BP	GO:0010054	trichoblast differentiation	RCA	Interproscan
BP	GO:0016049	cell growth	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0048364	root development	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048527	lateral root development	RCA	Interproscan
BP	GO:0048528	post-embryonic root development	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	RCA	Interproscan
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0090696	post-embryonic plant organ development	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004601	peroxidase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
BP	GO:0071365	cellular response to auxin stimulus	IEP	HCCA
BP	GO:0071369	cellular response to ethylene stimulus	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0072732	cellular response to calcium ion starvation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013210	LRR_N_plant-typ	57	89

External Links

No external refs found!

AT1G12040 (LRX1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation