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  5. AT1G11400

AT1G11400 (PYM)


Aliases : PYM

Description : partner of Y14-MAGO


Gene families : OG0005414 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005414_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G11400
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00071380 PYM,... RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
MA_54542g0010 PYM component PYM of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Ppi_g00475 PYM component *(PYM) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g18777 No alias component *(PYM) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Tin_g19722 PYM component *(PYM) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e001129_P001 PYM, Zm00001e001129 component PYM of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005654 nucleoplasm IDA Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0006396 RNA processing RCA Interproscan
BP GO:0010628 positive regulation of gene expression IEP Interproscan
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Type GO Term Name Evidence Source
MF GO:0004034 aldose 1-epimerase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006012 galactose metabolic process IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
MF GO:0008476 protein-tyrosine sulfotransferase activity IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051457 maintenance of protein location in nucleus IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
InterPro domains Description Start Stop
IPR015362 WIBG_mago-bd 22 48
No external refs found!