AT1G09630 (ATRABA2A, ATRAB11C,...)

Aliases : ATRABA2A, ATRAB11C, ATRAB-A2A, RAB-A2A, RAB11c

Description : RAB GTPase 11C

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G09630
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
Adi_g078038	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04605	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06465	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g18147	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g00731	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g09683	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g41226	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene03989.t1	AtRABA1f,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0006.g010022	AtRABA1f, RABA1f	A-class RAB GTPase & original description: CDS=217-867	0.02	OrthoFinder output from all 47 species
Cba_g09606	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g75310	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.97	AtRABA1e, RABA1e	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Cre03.g189250	ATRABA2A,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Dac_g02569	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g08021	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g40522	ATRABA2A,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01023225001	ATRABA2A,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Gb_34717	ARA-1, ATRABA5E,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Gb_37703	ATRABA2A,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
LOC_Os05g01480.1	ATRABA2A,...	A-class RAB GTPase	0.05	OrthoFinder output from all 47 species
LOC_Os06g35814.1	ATHSGBP, RABA1d,...	A-class RAB GTPase	0.05	OrthoFinder output from all 47 species
Len_g03672	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g27141	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
MA_109703g0010	AtRABA1f, RABA1f	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
MpVg00760.1	AtRABA1f, RABA1f	No annotation	0.04	OrthoFinder output from all 47 species
Nbi_g04633	RABA2b,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g15644	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g02973	ATRABA2A,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g12414	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c2_10280V3.1	RABA2b,...	RAB GTPase homolog A2B	0.02	OrthoFinder output from all 47 species
Solyc10g045550.2.1	ATRABA2A,...	A-class RAB GTPase	0.05	OrthoFinder output from all 47 species
Solyc12g014080.2.1	AtRABA1f,...	A-class RAB GTPase	0.04	OrthoFinder output from all 47 species
Spa_g14805	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g16289	ATRABA2A,...	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g48715	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g56612	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g13810	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e030680_P001	ATHSGBP, RABA1d,...	A-class RAB GTPase	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009504	cell plate	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016192	vesicle-mediated transport	RCA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
BP	GO:0019932	second-messenger-mediated signaling	RCA	Interproscan
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004017	adenylate kinase activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0005513	detection of calcium ion	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005753	mitochondrial proton-transporting ATP synthase complex	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
CC	GO:0005771	multivesicular body	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006261	DNA-templated DNA replication	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006635	fatty acid beta-oxidation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0007276	gamete generation	IEP	HCCA
BP	GO:0007292	female gamete generation	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	HCCA
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009062	fatty acid catabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009404	toxin metabolic process	IEP	HCCA
BP	GO:0009407	toxin catabolic process	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
BP	GO:0009612	response to mechanical stimulus	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010078	maintenance of root meristem identity	IEP	HCCA
BP	GO:0010311	lateral root formation	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0016042	lipid catabolic process	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016054	organic acid catabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019395	fatty acid oxidation	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0030258	lipid modification	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034440	lipid oxidation	IEP	HCCA
BP	GO:0035266	meristem growth	IEP	HCCA
BP	GO:0035966	response to topologically incorrect protein	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044242	cellular lipid catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	HCCA
MF	GO:0045309	protein phosphorylated amino acid binding	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046395	carboxylic acid catabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0048232	male gamete generation	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0048829	root cap development	IEP	HCCA
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
MF	GO:0051219	phosphoprotein binding	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0051592	response to calcium ion	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051788	response to misfolded protein	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
BP	GO:0060968	obsolete regulation of gene silencing	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
BP	GO:0090351	seedling development	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0098754	detoxification	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	14	174

External Links

No external refs found!

AT1G09630 (ATRABA2A, ATRAB11C,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation