AT1G08450 (AtCRT3, EBS2, CRT3, PSL1)

Aliases : AtCRT3, EBS2, CRT3, PSL1

Description : calreticulin 3

Gene families : OG0000812 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000812_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G08450
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
Cba_g20485	AtCRT1a, CRT1a, CRT1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g29983	AtCRT3, EBS2, CRT3, PSL1	component *(CRT3) of ER luminal chaperone complex &...	0.02	OrthoFinder output from all 47 species
Cba_g62429	AtCRT1a, CRT1a, CRT1	ER luminal lectin chaperone *(CRT) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g42737	AtCRT3, EBS2, CRT3, PSL1	component *(CRT3) of ER luminal chaperone complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01019060001	AtCRT3, EBS2, CRT3, PSL1	Protein modification.protein folding and quality...	0.11	OrthoFinder output from all 47 species
Gb_37391	AtCRT3, EBS2, CRT3, PSL1	lectin chaperone (CRT)	0.03	OrthoFinder output from all 47 species
LOC_Os01g67054.1	AtCRT3, EBS2,...	lectin chaperone (CRT)	0.06	OrthoFinder output from all 47 species
LOC_Os05g43170.1	AtCRT3, EBS2,...	lectin chaperone (CRT)	0.05	OrthoFinder output from all 47 species
Solyc04g048900.3.1	AtCRT3, EBS2,...	lectin chaperone (CRT)	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005783	endoplasmic reticulum	IDA	Interproscan
CC	GO:0005789	endoplasmic reticulum membrane	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006457	protein folding	IGI	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0006995	cellular response to nitrogen starvation	RCA	Interproscan
BP	GO:0007154	cell communication	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008219	cell death	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009267	cellular response to starvation	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	RCA	Interproscan
BP	GO:0009626	plant-type hypersensitive response	IMP	Interproscan
BP	GO:0009627	systemic acquired resistance	RCA	Interproscan
BP	GO:0009696	salicylic acid metabolic process	None	Extended
BP	GO:0009697	salicylic acid biosynthetic process	RCA	Interproscan
BP	GO:0009812	flavonoid metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0012501	programmed cell death	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0018958	phenol-containing compound metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031347	regulation of defense response	RCA	Interproscan
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0031669	cellular response to nutrient levels	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034050	programmed cell death induced by symbiont	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	RCA	Interproscan
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0042537	benzene-containing compound metabolic process	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0042594	response to starvation	None	Extended
BP	GO:0042742	defense response to bacterium	IMP	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043562	cellular response to nitrogen levels	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044403	biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	RCA	Interproscan
BP	GO:0046189	phenol-containing compound biosynthetic process	None	Extended
BP	GO:0046283	anthocyanin-containing compound metabolic process	IMP	Interproscan
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050801	monoatomic ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051702	biological process involved in interaction with symbiont	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055065	metal ion homeostasis	None	Extended
BP	GO:0055074	calcium ion homeostasis	IGI	Interproscan
BP	GO:0055080	monoatomic cation homeostasis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:0098771	inorganic ion homeostasis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	IEP	HCCA
BP	GO:0001666	response to hypoxia	IEP	HCCA
BP	GO:0002218	activation of innate immune response	IEP	HCCA
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002253	activation of immune response	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002684	positive regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
BP	GO:0002833	positive regulation of response to biotic stimulus	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004708	MAP kinase kinase activity	IEP	HCCA
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006071	glycerol metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006884	cell volume homeostasis	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009403	toxin biosynthetic process	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009595	detection of biotic stimulus	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009625	response to insect	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0009700	indole phytoalexin biosynthetic process	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009759	indole glucosinolate biosynthetic process	IEP	HCCA
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009863	salicylic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009992	cellular water homeostasis	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010120	camalexin biosynthetic process	IEP	HCCA
BP	GO:0010200	response to chitin	IEP	HCCA
BP	GO:0010243	response to organonitrogen compound	IEP	HCCA
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010374	stomatal complex development	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
BP	GO:0010942	positive regulation of cell death	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016143	S-glycoside metabolic process	IEP	HCCA
BP	GO:0016144	S-glycoside biosynthetic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019400	alditol metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0019757	glycosinolate metabolic process	IEP	HCCA
BP	GO:0019758	glycosinolate biosynthetic process	IEP	HCCA
BP	GO:0019760	glucosinolate metabolic process	IEP	HCCA
BP	GO:0019761	glucosinolate biosynthetic process	IEP	HCCA
BP	GO:0030104	water homeostasis	IEP	HCCA
BP	GO:0030643	cellular phosphate ion homeostasis	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031348	negative regulation of defense response	IEP	HCCA
BP	GO:0031349	positive regulation of defense response	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0032103	positive regulation of response to external stimulus	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0036293	response to decreased oxygen levels	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042343	indole glucosinolate metabolic process	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
BP	GO:0043068	positive regulation of programmed cell death	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043900	obsolete regulation of multi-organism process	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0045089	positive regulation of innate immune response	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA
BP	GO:0046217	indole phytoalexin metabolic process	IEP	HCCA
BP	GO:0046713	borate transport	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048585	negative regulation of response to stimulus	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0050778	positive regulation of immune response	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0050832	defense response to fungus	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0051865	protein autoubiquitination	IEP	HCCA
BP	GO:0052314	phytoalexin metabolic process	IEP	HCCA
BP	GO:0052315	phytoalexin biosynthetic process	IEP	HCCA
BP	GO:0052317	camalexin metabolic process	IEP	HCCA
BP	GO:0052386	cell wall thickening	IEP	HCCA
BP	GO:0052543	callose deposition in cell wall	IEP	HCCA
BP	GO:0055062	phosphate ion homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
BP	GO:0070482	response to oxygen levels	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0090558	plant epidermis development	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1900055	regulation of leaf senescence	IEP	HCCA
BP	GO:1900056	negative regulation of leaf senescence	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001580	Calret/calnex	269	342
IPR001580	Calret/calnex	34	268

External Links

No external refs found!

AT1G08450 (AtCRT3, EBS2, CRT3, PSL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation