AT1G08340

Description : Rho GTPase activating protein with PAK-box/P21-Rho-binding domain

Gene families : OG0000915 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000915_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G08340
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00091880	evm_27.TU.AmTr_v1...	Multi-process regulation.Rop GTPase regulatory...	0.02	OrthoFinder output from all 47 species
AMTR_s00057p00129680	evm_27.TU.AmTr_v1...	Multi-process regulation.Rop GTPase regulatory...	0.05	OrthoFinder output from all 47 species
AT2G46710	No alias	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain	0.06	OrthoFinder output from all 47 species
Ala_g15854	No alias	ROP-activating protein *(RopGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08802	No alias	ROP-activating protein *(RopGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g05258	No alias	ROP-activating protein *(RopGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05032	No alias	ROP-activating protein *(RopGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g25512	No alias	ROP-activating protein *(RopGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene05177.t2	Aspi01Gene05177	ROP-activating protein *(RopGAP) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene06670.t1	Aspi01Gene06670	ROP-activating protein *(RopGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0037.g025995	No alias	ROP-activating protein *(RopGAP) & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.07G082200.1	Ceric.07G082200	ROP-activating protein *(RopGAP) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.28G020500.1	Ceric.28G020500	ROP-activating protein *(RopGAP) & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g18912	No alias	ROP-activating protein *(RopGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g11578	No alias	ROP-activating protein *(RopGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06070	No alias	ROP-activating protein *(RopGAP) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01033865001	No alias	Multi-process regulation.Rop GTPase regulatory...	0.11	OrthoFinder output from all 47 species
LOC_Os01g73630.1	LOC_Os01g73630	ROP-activating protein (RopGAP)	0.05	OrthoFinder output from all 47 species
LOC_Os02g45600.1	LOC_Os02g45600	ROP-activating protein (RopGAP)	0.06	OrthoFinder output from all 47 species
LOC_Os04g48790.1	LOC_Os04g48790	ROP-activating protein (RopGAP)	0.09	OrthoFinder output from all 47 species
LOC_Os11g05540.1	LOC_Os11g05540	ROP-activating protein (RopGAP)	0.02	OrthoFinder output from all 47 species
LOC_Os12g34840.1	LOC_Os12g34840	ROP-activating protein (RopGAP)	0.03	OrthoFinder output from all 47 species
Len_g13298	No alias	ROP-activating protein *(RopGAP) & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g17464	No alias	ROP-activating protein *(RopGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g39497	No alias	ROP-activating protein *(RopGAP) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10436113g0010	No alias	ROP-activating protein (RopGAP)	0.03	OrthoFinder output from all 47 species
Msp_g14837	No alias	ROP-activating protein *(RopGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g06901	No alias	ROP-activating protein *(RopGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g13116	No alias	ROP-activating protein *(RopGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25746	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g30150	No alias	ROP-activating protein *(RopGAP) & original description: none	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002103	No alias	ROP-activating protein *(RopGAP) & original description:...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006099	No alias	ROP-activating protein *(RopGAP) & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012358	No alias	ROP-activating protein *(RopGAP) & original description:...	0.03	OrthoFinder output from all 47 species
Smo13019	No alias	Multi-process regulation.Rop GTPase regulatory...	0.06	OrthoFinder output from all 47 species
Solyc06g084450.4.1	Solyc06g084450	ROP-activating protein (RopGAP)	0.04	OrthoFinder output from all 47 species
Solyc11g068520.3.1	Solyc11g068520	ROP-activating protein (RopGAP)	0.05	OrthoFinder output from all 47 species
Spa_g04743	No alias	ROP-activating protein *(RopGAP) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g45662	No alias	ROP-activating protein *(RopGAP) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g44395	No alias	ROP-activaTing protein *(RopGAP) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e007181_P002	Zm00001e007181	ROP-activating protein (RopGAP)	0.12	OrthoFinder output from all 47 species
Zm00001e033341_P001	Zm00001e033341	ROP-activating protein (RopGAP)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010087	phloem or xylem histogenesis	None	Extended
BP	GO:0010089	xylem development	RCA	Interproscan
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	RCA	Interproscan
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009900	dehiscence	IEP	HCCA
BP	GO:0010047	fruit dehiscence	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2000652	regulation of secondary cell wall biogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000095	CRIB_dom	2	30
IPR000198	RhoGAP_dom	65	199

External Links

No external refs found!

AT1G08340

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation