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  5. AT1G08230

AT1G08230


No description available


Gene families : OG0000375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000375_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G08230

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00224130 evm_27.TU.AmTr_v1... Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
Aev_g08139 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Aev_g24251 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Ala_g06006 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Als_g03002 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Als_g11432 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Aop_g38753 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene10142.t1 Aspi01Gene10142 gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene31026.t1 Aspi01Gene31026 gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene31541.t1 Aspi01Gene31541 gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32439.t1 Aspi01Gene32439 gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene50735.t2 Aspi01Gene50735 gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene62337.t1 Aspi01Gene62337 gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0042.g026938 No alias not classified & original description: CDS=503-2446 0.03 OrthoFinder output from all 47 species
Cba_g31499 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Cba_g38495 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Cba_g53669 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Dac_g10158 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Dac_g13650 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g08836 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g36639 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g39908 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Dde_g08000 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g11979 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01034728001 No alias Solute transport.carrier-mediated transport.APC... 0.06 OrthoFinder output from all 47 species
GSVIVT01034729001 No alias Solute transport.carrier-mediated transport.APC... 0.04 OrthoFinder output from all 47 species
Gb_39426 No alias gamma-aminobutyric acid transporter (GAT) 0.05 OrthoFinder output from all 47 species
LOC_Os01g43320.1 LOC_Os01g43320 gamma-aminobutyric acid transporter (GAT) 0.05 OrthoFinder output from all 47 species
LOC_Os01g63854.1 LOC_Os01g63854 gamma-aminobutyric acid transporter (GAT) 0.03 OrthoFinder output from all 47 species
Len_g13839 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Len_g20418 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.06 OrthoFinder output from all 47 species
MA_10429687g0010 ATPROT1, PROT1 proline transporter (ProT) 0.06 OrthoFinder output from all 47 species
MA_323417g0010 No alias gamma-aminobutyric acid transporter (GAT) 0.02 OrthoFinder output from all 47 species
Msp_g02429 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Msp_g06680 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g21163 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Msp_g26375 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g10235 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.05 OrthoFinder output from all 47 species
Ore_g16685 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Ore_g20340 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Pir_g08627 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g25018 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016181 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species
Sam_g24521 No alias gamma-aminobutyric acid transporter *(GAT) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
MF GO:0015185 gamma-aminobutyric acid transmembrane transporter activity IDA Interproscan
BP GO:0015812 gamma-aminobutyric acid transport IGI Interproscan
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Type GO Term Name Evidence Source
BP GO:0002376 immune system process IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009267 cellular response to starvation IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016036 cellular response to phosphate starvation IEP HCCA
CC GO:0016602 CCAAT-binding factor complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019374 galactolipid metabolic process IEP HCCA
BP GO:0019375 galactolipid biosynthetic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
BP GO:0031668 cellular response to extracellular stimulus IEP HCCA
BP GO:0031669 cellular response to nutrient levels IEP HCCA
BP GO:0042594 response to starvation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0071496 cellular response to external stimulus IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!