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  5. AT1G06760

AT1G06760


Description : winged-helix DNA-binding transcription factor family protein


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G06760

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00112340 HIS1-3,... Chromatin organisation.histones.H1 linker histone 0.07 OrthoFinder output from all 47 species
Adi_g012251 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052669 No alias linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23326 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g09382 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g43401 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05135 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14110 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36461 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene11879.t1 HIS1-3, Aspi01Gene11879 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11880.t1 HIS1-3, Aspi01Gene11880 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25496.t1 HIS1-3, Aspi01Gene25496 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0049.g030788 No alias linker histone *(H1) & original description: CDS=1-786 0.11 OrthoFinder output from all 47 species
Cba_g50410 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G101000.1 HIS1-3, Ceric.05G101000 linker histone *(H1) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.17G067800.1 HIS1-3, Ceric.17G067800 linker histone *(H1) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.30G041600.1 Ceric.30G041600 linker histone *(H1) & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.34G011100.1 HIS1-3, Ceric.34G011100 linker histone *(H1) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.34G044200.1 Ceric.34G044200 linker histone *(H1) & original description:... 0.03 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.18 OrthoFinder output from all 47 species
Dac_g20797 HIS1-3 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g02276 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23302 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05343 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05478 No alias linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.05 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.12 OrthoFinder output from all 47 species
LOC_Os04g18090.1 HIS1-3, LOC_Os04g18090 linker histone (H1) 0.22 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.06 OrthoFinder output from all 47 species
Len_g14042 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Len_g23782 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54319 No alias linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g27513 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
MA_102457g0010 No alias linker histone (H1) 0.1 OrthoFinder output from all 47 species
MA_10428525g0020 No alias linker histone (H1) 0.05 OrthoFinder output from all 47 species
MA_10436125g0020 ATTRB1, TRB1 linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_11137g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_11231g0010 HIS1-3 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_500183g0010 HIS1-3 linker histone (H1) 0.09 OrthoFinder output from all 47 species
MA_877599g0010 No alias linker histone (H1) 0.02 OrthoFinder output from all 47 species
Mp6g03150.1 HIS1-3 linker histone (H1) 0.14 OrthoFinder output from all 47 species
Msp_g09818 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g12026 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04093 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59703 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11041 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11042 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Solyc09g083380.4.1 Solyc09g083380 linker histone (H1) 0.12 OrthoFinder output from all 47 species
Spa_g09322 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09323 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18792 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50934 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50935 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g01715 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006018_P006 Zm00001e006018 linker histone (H1) 0.04 OrthoFinder output from all 47 species
Zm00001e007189_P001 HIS1-3, Zm00001e007189 linker histone (H1) 0.06 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome ISS Interproscan
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006334 nucleosome assembly ISS Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 62 128
No external refs found!