AT1G06170

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0005877 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005877_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G06170
Cluster	HCCA: Cluster_92

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00183690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.bHLH...	0.07	OrthoFinder output from all 47 species
Adi_g099038	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g69486	No alias	bHLH-type transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Ceric.14G094900.1	Ceric.14G094900	bHLH-type transcription factor & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.21G089700.1	Ceric.21G089700	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g42960	No alias	bHLH-type transcription factor & original description: none	0.12	OrthoFinder output from all 47 species
Dcu_g43850	No alias	not classified & original description: none	0.11	OrthoFinder output from all 47 species
GSVIVT01011330001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.06	OrthoFinder output from all 47 species
LOC_Os01g18870.1	LOC_Os01g18870	transcription factor (bHLH)	0.09	OrthoFinder output from all 47 species
Len_g59537	No alias	bHLH-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
MA_1220g0010	No alias	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
Msp_g41404	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g30559	No alias	bHLH-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Ore_g41320	No alias	bHLH-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g43808	No alias	bHLH-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Ppi_g16733	No alias	bHLH-type transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Solyc01g081090.2.1	Solyc01g081090	transcription factor (bHLH)	0.06	OrthoFinder output from all 47 species
Solyc01g081100.3.1	Solyc01g081100	transcription factor (bHLH)	0.14	OrthoFinder output from all 47 species
Spa_g43678	No alias	bHLH-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g48416	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e025435_P001	Zm00001e025435	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
BP	GO:0009554	megasporogenesis	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009820	alkaloid metabolic process	IEP	HCCA
BP	GO:0009821	alkaloid biosynthetic process	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048533	sporocyte differentiation	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0048658	anther wall tapetum development	IEP	HCCA
MF	GO:0051119	sugar transmembrane transporter activity	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	220	261

External Links

No external refs found!

AT1G06170

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation