AT1G03600 (PSB27)

Aliases : PSB27

Description : photosystem II family protein

Gene families : OG0006913 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006913_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G03600
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00251710	PSB27,...	Photosynthesis.photophosphorylation.photosystem...	0.04	OrthoFinder output from all 47 species
Adi_g017378	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.1	OrthoFinder output from all 47 species
Adi_g017379	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.1	OrthoFinder output from all 47 species
Ala_g03684	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.08	OrthoFinder output from all 47 species
Aob_g03856	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.11	OrthoFinder output from all 47 species
Aop_g01610	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.05	OrthoFinder output from all 47 species
Aspi01Gene05705.t1	PSB27, Aspi01Gene05705	protein involved in PS-II assembly *(Psb27) & original...	0.05	OrthoFinder output from all 47 species
Azfi_s0531.g075849	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.08	OrthoFinder output from all 47 species
Ceric.35G049900.1	PSB27, Ceric.35G049900	protein involved in PS-II assembly *(Psb27) & original...	0.23	OrthoFinder output from all 47 species
Cre05.g243800	PSB27	Photosynthesis.photophosphorylation.photosystem...	0.18	OrthoFinder output from all 47 species
Dac_g02601	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.07	OrthoFinder output from all 47 species
Dcu_g44405	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.09	OrthoFinder output from all 47 species
Dde_g21620	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.08	OrthoFinder output from all 47 species
Ehy_g19278	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.16	OrthoFinder output from all 47 species
Ehy_g20883	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.06	OrthoFinder output from all 47 species
GSVIVT01030552001	PSB27	Photosynthesis.photophosphorylation.photosystem...	0.14	OrthoFinder output from all 47 species
Gb_23437	PSB27	Psb27 protein involved in PS-II assembly	0.05	OrthoFinder output from all 47 species
LOC_Os03g21560.1	PSB27, LOC_Os03g21560	Psb27 protein involved in PS-II assembly	0.27	OrthoFinder output from all 47 species
Len_g11187	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.17	OrthoFinder output from all 47 species
MA_388691g0010	PSB27	Psb27 protein involved in PS-II assembly	0.17	OrthoFinder output from all 47 species
Mp3g19780.1	PSB27	Psb27 protein involved in PS-II assembly	0.25	OrthoFinder output from all 47 species
Msp_g04977	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.11	OrthoFinder output from all 47 species
Nbi_g03338	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.12	OrthoFinder output from all 47 species
Pir_g09257	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.08	OrthoFinder output from all 47 species
Smo77713	PSB27	Photosynthesis.photophosphorylation.photosystem...	0.08	OrthoFinder output from all 47 species
Solyc07g054290.1.1	PSB27, Solyc07g054290	Psb27 protein involved in PS-II assembly	0.17	OrthoFinder output from all 47 species
Spa_g04006	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.1	OrthoFinder output from all 47 species
Spa_g04007	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.09	OrthoFinder output from all 47 species
Spa_g05331	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.12	OrthoFinder output from all 47 species
Spa_g05332	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.04	OrthoFinder output from all 47 species
Tin_g00234	PSB27	protein involved in PS-II assembly *(Psb27) & original...	0.15	OrthoFinder output from all 47 species
Zm00001e001572_P001	PSB27, Zm00001e001572	Psb27 protein involved in PS-II assembly	0.2	OrthoFinder output from all 47 species
Zm00001e038249_P001	PSB27, Zm00001e038249	Psb27 protein involved in PS-II assembly	0.27	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009543	chloroplast thylakoid lumen	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009657	plastid organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010206	photosystem II repair	IMP	Interproscan
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
CC	GO:0019867	outer membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030091	protein repair	None	Extended
CC	GO:0030095	chloroplast photosystem II	ISS	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031977	thylakoid lumen	None	Extended
CC	GO:0031978	plastid thylakoid lumen	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098807	chloroplast thylakoid membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
MF	GO:0003756	protein disulfide isomerase activity	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006636	unsaturated fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
MF	GO:0008187	poly-pyrimidine tract binding	IEP	HCCA
MF	GO:0008266	poly(U) RNA binding	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
CC	GO:0009528	plastid inner membrane	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009642	response to light intensity	IEP	HCCA
BP	GO:0009643	photosynthetic acclimation	IEP	HCCA
BP	GO:0009644	response to high light intensity	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0009668	plastid membrane organization	IEP	HCCA
CC	GO:0009706	chloroplast inner membrane	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009768	photosynthesis, light harvesting in photosystem I	IEP	HCCA
BP	GO:0009773	photosynthetic electron transport in photosystem I	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
BP	GO:0010027	thylakoid membrane organization	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010114	response to red light	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0010193	response to ozone	IEP	HCCA
BP	GO:0010205	photoinhibition	IEP	HCCA
BP	GO:0010218	response to far red light	IEP	HCCA
MF	GO:0010242	oxygen evolving activity	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
MF	GO:0015120	phosphoglycerate transmembrane transporter activity	IEP	HCCA
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	HCCA
BP	GO:0015713	phosphoglycerate transmembrane transport	IEP	HCCA
BP	GO:0015717	triose phosphate transport	IEP	HCCA
BP	GO:0015718	monocarboxylic acid transport	IEP	HCCA
BP	GO:0015748	organophosphate ester transport	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015994	chlorophyll metabolic process	IEP	HCCA
BP	GO:0015995	chlorophyll biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016864	intramolecular oxidoreductase activity, transposing S-S bonds	IEP	HCCA
BP	GO:0017014	protein nitrosylation	IEP	HCCA
BP	GO:0018119	peptidyl-cysteine S-nitrosylation	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0018198	peptidyl-cysteine modification	IEP	HCCA
BP	GO:0019216	regulation of lipid metabolic process	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019344	cysteine biosynthetic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
BP	GO:0031407	oxylipin metabolic process	IEP	HCCA
BP	GO:0031408	oxylipin biosynthetic process	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0033559	unsaturated fatty acid metabolic process	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0035436	triose phosphate transmembrane transport	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	HCCA
BP	GO:0042549	photosystem II stabilization	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0042873	aldonate transmembrane transport	IEP	HCCA
MF	GO:0042879	aldonate transmembrane transporter activity	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
BP	GO:0043155	negative regulation of photosynthesis, light reaction	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
MF	GO:0048529	magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
MF	GO:0071917	triose-phosphate transmembrane transporter activity	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901264	carbohydrate derivative transport	IEP	HCCA
BP	GO:1901401	regulation of tetrapyrrole metabolic process	IEP	HCCA
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:1905156	negative regulation of photosynthesis	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025585	PSII_Pbs27	42	170

External Links

No external refs found!

AT1G03600 (PSB27)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation